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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:30:39 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FAD-oxidase_NC.html
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#====================================
# Aligned_structures: 4
# 1: 1diia.pdb
# 2: 1f0xa.pdb
# 3: 1i19a.pdb
# 4: 1vaoa.pdb
#
# Length: 802
# Identity: 7/802 ( 0.9%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 35/802 ( 4.4%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 479/802 ( 59.7%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1diia.pdb 1 ----AVLPKGVTQGEFNKAVQKFRA--------LLGDDN-VLVESDQL----VP----YN 39
1f0xa.pdb 1 ---------------NKAFLNELAR--------LVGSSH-LLTDPAKT----AR----YR 28
1i19a.pdb 1 -------------------------VAPLPTPPNFPNDIALFQQAY-------------- 21
1vaoa.pdb 1 EFRPLTLPPKLSLSDFNEFIQDIIR--------IVGSEN-VEVI----SVDGSYMKPTHT 47
g
1diia.pdb 40 KI-MMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQ-- 96
1f0xa.pdb 29 KGFRSG-Q---GDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLT-EGSTPNGND 83
1i19a.pdb 22 QNWSKEIM---LDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMHGWT-PLTVE-KGA 76
1vaoa.pdb 48 HDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRV-- 105
a a v p v i p
1diia.pdb 97 --R-GQVILDLK-KMNKIIKIDPEM---CYALVEPGVTFGQMYDYIQENNL--PVM-LSF 146
1f0xa.pdb 84 Y-DRDVVIISTL-RLDKLHV-L-GKG--EQVLAYPGTTLYSLEKALKPLGR----EPHSV 133
1i19a.pdb 77 NVE-KVILADTMTHLNGITV-NTGG-PVATVTAGAGASIEAIVTELQKHDL----GWANL 129
1vaoa.pdb 106 --S-GSVVLDMGKNMNRVLEVNVEG---AYCVVEPGVTYHDLHNYLEANNLRDKLW-LDV 158
v d n pG t l l
1diia.pdb 147 SAPS-AIAGPVGNTMDRGVGY---TPY---------GEHFMMQCGMEVVLA----NGDVY 189
1f0xa.pdb 134 IGSSCIGASVIGGICNNSGGS---LVQR--------GPA--YTEMSLFARINEDGK-LTL 179
1i19a.pdb 130 PAP--GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTY-ALE 186
1vaoa.pdb 159 PDL--GGGSVLGNAVERGVGY---TPY---------GDHWMMHSGMEVVLA----NGELL 200
s G G G v
1diia.pdb 190 RTGMGGVPG------------------SN----------TWQIFKWGYG----------- 210
1f0xa.pdb 180 VNH------LGIDLG-------ETPEQILSKLDDDRIKDDDVR------HDGRHAHDYDY 220
1i19a.pdb 187 TYQ--------------------------------------------------------- 189
1vaoa.pdb 201 RTGMGALPD-----PKRPETMGLKPEDQP-------WSKIAHLFPYGFG----------- 237
1diia.pdb 211 ----------------P----TLDGMFTQAN-YGICTKMGFWLMPKPPVFKPFEVIFE-D 248
1f0xa.pdb 221 VHRVRDIEADTPARYNAD--PDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTN-Q 277
1i19a.pdb 190 ------------------RNDPRITPLLTNLGRCFLTSVTMQAGPNFR-QRCQSYTD-IP 229
1vaoa.pdb 238 ----------------P----YIDGLFSQSN-MGIVTKIGIWLMPNPRGYQSYLITLP-K 275
t p
1diia.pdb 249 EADIVEIVDA-------LRPLRMSN-TIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPD 300
1f0xa.pdb 278 ---PEVLTEI-------RRHILANFENLPVAGEYMHRDIYDIAE-L-------------- 312
1i19a.pdb 230 ---WRELFA-PKGADGRTFEKFVA---ESGGAEAIWYP---------------------- 260
1vaoa.pdb 276 DGDLKQAVDI-------IRPLRLGM-ALQNVPTIRHILLDAAVL-GDKRSYSSRTEPLSD 326
r
1diia.pdb 301 SVIKQMQKDTG---------MGAWNLYAAL---------------------YGTQEQ--- 327
1f0xa.pdb 313 -----------PPRMKNWRDKYEHHLLLKM---------------------AG--DG--- 335
1i19a.pdb 261 --------------------FTEKPWMKVWTVSPSLVGKPPQAREVSGPYNYI--FSDNL 298
1vaoa.pdb 327 EELDKIAKQLN---------LGRWNFYGAL---------------------YGPEPI--- 353
yg
1diia.pdb 328 ------------------VDVNWKIVTDVFKK------LGKGRIVTQEEAGDTQPFKYRA 363
1f0xa.pdb 336 ------------------VGEAKSWLVDYFKQ------A-EGDFFVC--------TP--- 359
1i19a.pdb 299 PEPITDMIGAINAGNPGIAPLFGPAMYEITKLGLAATNA-NDIWGW---------SK--- 345
1vaoa.pdb 354 ------------------RRVLWETIKDAFSA------IPGVKFYFPEDTPENSVLRVRD 389
d fk
1diia.pdb 364 QLMSGVP---------------------------NLQEFGLYNWRGGGGSMWFAPVSEA- 395
1f0xa.pdb 360 -------EEGSK-----------------AFLHRFAAAGAAIRYQA-------------V 382
1i19a.pdb 346 -------DVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWFH-------------E 385
1vaoa.pdb 390 KTMQGIP---------------------------TYDELKWIDWLPNGAHLFFSPIAKV- 421
w
1diia.pdb 396 ----RGSECKKQAAMAKRVLH--KYGLDYVAEFIVA------------------------ 425
1f0xa.pdb 383 HSDE---------------------V-E-D-ILALDIA-LRR----NDTEWYE-----HL 408
1i19a.pdb 386 RI--EFYRAKG----------EFPLN-GPVEIRCCGLDQA-ADVKVPSVGPP-TISATRP 430
1vaoa.pdb 422 ----SGEDAMMQYAVTKKRCQ--EAGLDFIGTFTVG------------------------ 451
1diia.pdb 426 -------P--------R-DMHHVIDVLYDRTNPEETKRADACFNELLDEFEK---EGYAV 466
1f0xa.pdb 409 PPEIDSQLVHKLYYGHFMCYVFHQDYIVKK--G--V-DVHALKEQMLELLQQ---RGAQY 460
1i19a.pdb 431 RPDH-PDW----------DVAIWLNVLGVPGTPGMFEFYREMEQWMRSHYNNDDATFR-P 478
1vaoa.pdb 452 -------M--------R-EMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAA---NGWGE 492
g
1diia.pdb 467 YRVN--------TR-----FQDRVAQSYG----P---V-KRKLEHAIKRAVDPNNILAPG 505
1f0xa.pdb 461 P-AEHNV-GH--------------------L---YK--A-PETLQKFYRENDPTNSMNPG 492
1i19a.pdb 479 E-WSKGWAFGPDPYTDNDIVTNKMRATYIEG---VPTTENWDTARARYNQIDPHRVFTNG 534
1vaoa.pdb 493 YRTH--------LA-----FMDQIMETYN-WNNS---S-FLRFNEVLKNAVDPNGIIAPG 534
DP pG
1diia.pdb 506 RSG-IDLNN-D-----F----- 515
1f0xa.pdb 493 IGK-TS-----KRKNW------ 502
1i19a.pdb 535 ---FM-----------DKLLP- 541
1vaoa.pdb 535 KSG-VWPSQYS-----HVTWKL 550
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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