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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:58:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FHA.html
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#====================================
# Aligned_structures: 2
#   1: 1g6ga.pdb
#   2: 1qu5a.pdb
#
# Length:        198
# Identity:       23/198 ( 11.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     23/198 ( 11.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           87/198 ( 43.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1g6ga.pdb               1  G-------------------------ENIVCRVICTT-GQ-IPIRDLSADISQVLKEKRS   33
1qu5a.pdb               1  -EAETREQKLLHSNNTENVKSSKKKGNGRFLTLKPLPDSIIQESLEIQQ-----------   48
                                                                                       

1g6ga.pdb              34  -IKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE---------------DGNLLLNDIS   77
1qu5a.pdb              49  GV-NPFFIGRSEDCNCKIE-DNRLSRVHCFIFKKRHAVGKSMYESPAQGLD-DIWYCHTG  105
                                   GR   C        RLS  H  I                   D         

1g6ga.pdb              78  TNGTWLNGQKVEKNSNQLLSQGDEITVGVG--VESDILSLVIFIND--------------  121
1qu5a.pdb             106  TNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNN-KFVIGFKVEINDTTGLFNEGLGMLQE  164
                           TN   LN          LL  GDEI                  IND              

1g6ga.pdb             122  ------------KFKQCL  127
1qu5a.pdb             165  QRVVLKQTAEEKDLVKKL  182
                                            L


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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