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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:00:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FTR.html
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#====================================
# Aligned_structures: 2
#   1: 1ftra1.pdb
#   2: 1ftra2.pdb
#
# Length:        187
# Identity:       18/187 (  9.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     18/187 (  9.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           78/187 ( 41.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ftra1.pdb              1  ---KMARVLITAASHKWAMIAVKEATGFGTSVIMC-----PAEAGI---DCGYVPPE-ET   48
1ftra2.pdb              1  TGVAGGNFYIMAESQPAGLQAAEAAVDA-------IKGVEGAYAPFPGGIVASASKVGS-   52
                                    I A S      A   A                A A                

1ftra1.pdb             49  PD--------------------------GRPGVTIMIGHNDEDELKEQLLDRIGQCVMTA   82
1ftra2.pdb             53  --KQYDFLPASTNDAYCPTVEDNELPEGVKCVYEIVINGLNEEAVKEAMRVGIEAACQ-Q  109
                                                             I I    E   KE     I       

1ftra1.pdb             83  PT-ASAFDAMPE-AEKEDEDRVGYKLSFFGDGYQEEDELDGRKVWKI-PVVEGEFIVEDS  139
1ftra2.pdb            110  PGVVKISAGNFGGKLGQYEIHLHDL-F--------------------MEIN--GVEIEDT  146
                           P                 E                                      ED 

1ftra1.pdb            140  FGIT---  143
1ftra2.pdb            147  FAEAFEA  153
                           F      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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