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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:57:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ferrochelatase.html
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#====================================
# Aligned_structures: 2
#   1: 1doza.pdb
#   2: 1hrka.pdb
#
# Length:        365
# Identity:       80/365 ( 21.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     80/365 ( 21.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/365 ( 17.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1doza.pdb               1  S--RKKMGLLVMAYGTPYKEEDIERYYTHIRR---GRKP-------EPE---MLQDLKDR   45
1hrka.pdb               1  -RKP-KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQ   58
                                K G L    G P    D                                      

1doza.pdb              46  YEAIGGISPLAQITEQQAHNLEQHLNEIQ-DE-ITFKAYIGLKHIEPFIEDAVAEMHKDG  103
1hrka.pdb              59  YRRIGGGSPIKIWTSKQGEGMVKLLDE-LSPNTAPHKYYIGFRYVHPLTEEAIEEMERDG  117
                           Y  IGG SP    T  Q       L E         K YIG     P  E A  EM  DG

1doza.pdb             104  ITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK-L--GGLTITSVESWYDEPKFVTYWVDRV  160
1hrka.pdb             118  LERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHI  177
                              A      P  S     S                         W           D  

1doza.pdb             161  KETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGV-SEYAVGW  219
1hrka.pdb             178  LKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVW  237
                                  P   R       SAHSLP      GDPYP           E       Y   W

1doza.pdb             220  QSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVV-TDD  278
1hrka.pdb             238  QSKV-GPMPWLGPQTDESIKGLCE-RGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKE  295
                           QS    P PWLGP        L E  G      VP  F  DH E LY  D E   V    

1doza.pdb             279  I-GASYYRPEMPNAKPEFIDALATVVLKKLGR----------------------------  309
1hrka.pdb             296  CGVENIRRAESLNGNPLFSKALADLVHSHIQ-SNELCSKQLTLSCPLCVNPVCRETKSFF  354
                                  R E  N  P F  ALA  V                                  

1doza.pdb                  -----     
1hrka.pdb             355  TSQQL  359
                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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