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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:00:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fz.html
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#====================================
# Aligned_structures: 2
#   1: 1ijxa.pdb
#   2: 1ijya.pdb
#
# Length:        129
# Identity:       56/129 ( 43.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     56/129 ( 43.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           11/129 (  8.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ijxa.pdb               1  -AACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAM   59
1ijya.pdb               1  ELACQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSM   60
                             AC     PLCK    E T MPN   H TQ  A L   QF  L    CSPDL FFLC M

1ijxa.pdb              60  YAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELP---VYDRGVCI  116
1ijya.pdb              61  YTPICLEDYK-KPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQGNPDT-LCM  118
                           Y PIC  D    P  PC SVCERA  GC P    Y   WP    CD LP     D   C 

1ijxa.pdb             117  SPEAIVTAD  125
1ijya.pdb             119  DYER-----  122
                             E      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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