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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:03:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GAD.html
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#====================================
# Aligned_structures: 2
#   1: 1c0aa.pdb
#   2: 1g51a.pdb
#
# Length:        136
# Identity:       43/136 ( 31.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/136 ( 31.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/136 ( 14.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c0aa.pdb               1  NPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAK   60
1g51a.pdb               1  FGLELKEVGPLFRQSGFRVFQEA-----ESVKALALPK--ALSRKEVAELEEVAKRHKAQ   53
                              EL  V  L     F VF          V AL  P    L RK   E     K   A 

1c0aa.pdb              61  GLAYIKVNERAKGLEG-INSPVAK-FLNAE-IIEDILDRTAAQDGDMIFFGADNKKIVAD  117
1g51a.pdb              54  GLAWARVEEG------GFSGGVAKFLE---PVREALLQATEARPGDTLLFVAGPRKVAAT  104
                           GLA   V E            VAK         E  L  T A  GD   F A   K  A 

1c0aa.pdb             118  AMGALRLKVGKDLGLT  133
1g51a.pdb             105  ALGAVRLRAADLLGLK  120
                           A GA RL     LGL 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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