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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:12:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GATase.html
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#====================================
# Aligned_structures: 3
#   1: 1a9xb.pdb
#   2: 1gpma.pdb
#   3: 1qdlb.pdb
#
# Length:        269
# Identity:       18/269 (  6.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     78/269 ( 29.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          105/269 ( 39.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a9xb.pdb               1  LNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKED--ELPFHVVAYDFGA---KRNILR   55
1gpma.pdb               1  ------------------------------------ENIHKHRILILDF-GSQYTQLVAR   23
1qdlb.pdb               1  ----------------------------------------MDLTLIIDN-YDSFVYNIAQ   19
                                                                       li Df       niar

1a9xb.pdb              56  MLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPA-P--CDYAITA------IQK  105
1gpma.pdb              24  RVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTT-E---------ENSPRAPQY   72
1qdlb.pdb              20  IVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDV------IKY   73
                            v elG y      d  s   i   nPdgiilS GPg p                  iqy

1a9xb.pdb             106  FLETDIPVFGI-LGHQLLALASGAKTVKMKFGHHGGNHPV--KDVEK-------------  149
1gpma.pdb              73  VFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFG-YAQV--EVVN-DSALVRGIEDALT  128
1qdlb.pdb              74  LGKR-TPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNS-PLSLYYGIA----  127
                             e   PvfGv lGhQ  a a Gak        hG    v    v               

1a9xb.pdb             150  ---NVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPG  206
1gpma.pdb             129  ADGKPLLDVWMSHGDKV--TAIPSDFITVASTE-SCPFAIMANEEKRFYGVQFHPEVTH-  184
1qdlb.pdb             128  ----KEFKATRYHSLVVD--EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGT  181
                                       Hg  V     p  liv a s  d     ih eekp ygvQfhPE    

1a9xb.pdb             207  PH--DAAPLFDHFIELIEQYRKT------  227
1gpma.pdb             185  --TRQGMRMLERFVRDI------CQCEAL  205
1qdlb.pdb             182  S---LGYKILYNFLNRV------------  195
                                g   l  F   i            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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