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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:04:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GFO_IDH_MocA_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1gcua.pdb
#   2: 1ofga.pdb
#
# Length:        402
# Identity:       51/402 ( 12.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     51/402 ( 12.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          131/402 ( 32.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gcua.pdb               1  MD--------------------------AEPKRKFGVVVVGVGRA---GSVRLRDLKDPR   31
1ofga.pdb               1  --ATLPAGASQVPTTPAGRPMPYAIRPMPEDR-RFGYAIVGLG--KYALNQILPGFAG--   53
                                                        E    FG   VG G         L       

1gcua.pdb              32  SAAFLNLIGFVSRRELGS-------LDEV---RQI---SLEDALRSQEIDVAYICSESSS   78
1ofga.pdb              54  C-QHSRIEALVSGNAE--KAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  110
                                     VS                V                   ID  YI    S 

1gcua.pdb              79  HEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRRE  138
1ofga.pdb             111  HAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKL  170
                           H         AGKHV  E PM  S A  Q     A      L                  

1gcua.pdb             139  VL-G--KELLKGSLRFTASP----------LEEERFGFP--AFSGISRLTWLVSLFGELS  183
1ofga.pdb             171  IRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEP  230
                                   L                     L  E  G       GI  L     L GE  

1gcua.pdb             184  L-ISATLEERKEDQY------MKMTVQLETQNKGLLSWIEEKGPGLKRNRYVNFQFTSGS  236
1ofga.pdb             231  IEVRAYTYSDPNDE-RFVEVEDRIIWQMRFRSGALSHGASSYS--TTTTSRFSVQGDKAV  287
                               A       D             Q       L                   Q     

1gcua.pdb             237  L-EE-VP--------------SVGVNK--------NIFLKDQDIFVQKLLD-QVSAEDLA  271
1ofga.pdb             288  LLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNK-------  340
                           L                                  N F    D                 

1gcua.pdb             272  A----EKKRIMHCLGLASDIQKLCH-----------------  292
1ofga.pdb             341  -PVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY  381
                                     M    L   I                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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