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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:23:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GXGXG.html
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#====================================
# Aligned_structures: 2
#   1: 1ea0a.pdb
#   2: 1llwa.pdb
#
# Length:        273
# Identity:      122/273 ( 44.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    122/273 ( 44.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            8/273 (  2.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ea0a.pdb               1  GRNEVPDTLDARIVAD-ARPLF-EEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQ   58
1llwa.pdb               1  -VHSNGPVLDDDILADPDIQEAINHQTTATKTYRLVNTDRTVGTRLSGAIAKKYGNNGFE   59
                                   LD  I AD                Y   NT R  GTRLS     K G  G  

1ea0a.pdb              59  PG-HITIRLRGTAGQSLGAFAVQGIKLEVMGDANDYVGKGLSGGTIVVRPTTSSPLETNK  117
1llwa.pdb              60  --GNITLNFQGAAGQSFGAFNLDGMTLHLQGEANDYVGKGMNGGEIVIVPHPQASFAPED  117
                               IT    G AGQS GAF   G  L   G ANDYVGKG  GG IV  P          

1ea0a.pdb             118  NTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGRV  177
1llwa.pdb             118  NVIIGNTCLYGATGGNLYANGRAGERFAVRNSVGKAVIEGAGDHCCEYMTGGVIVVLGPV  177
                           N IIGNT LYGAT G L A G AGERFAVRNS    V EG G   CEYMTGG  V LG V

1ea0a.pdb             178  GDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRF  237
1llwa.pdb             178  GRNVGAGMTGGLAYFLDEVGDLPEKINPEIITLQRITASKGEEQLKSLITAHVEHTGSPK  237
                           G N  AGMTGG AY  D    LP  IN E    QRI     E QLK LI  HV  T S  

1ea0a.pdb             238  AAEILNDWAREVTKFWQVVPKEMLNRLEVPVHL  270
1llwa.pdb             238  GKAILANWSDYLGKFWQAVPPSEKDSPEANN--  268
                              IL  W     KFWQ VP       E     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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