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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:15:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glu_syn_central.html
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#====================================
# Aligned_structures: 2
#   1: 1ea0a.pdb
#   2: 1llwa.pdb
#
# Length:        818
# Identity:      381/818 ( 46.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    381/818 ( 46.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           90/818 ( 11.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ea0a.pdb               1  HLDELVKTASLKGEPSDMDK--AELRRRQQAFGLTMEDMELILHPMVEDGKEAIGSMGDD   58
1llwa.pdb               1  --------------------DAQTVLQQQAAFGYTAEDVEMVVVPMASQGKEPTFCMGDD   40
                                                       Q AFG T ED E    PM   GKE    MGDD

1ea0a.pdb              59  SPIAVLSDKYRGLHHFFRQNFSQVTNPPIDSLRERRVMSLKTRLGNLGNILDEDETQTRL  118
1llwa.pdb              41  TPLAVLSHKPRLLYDYFKQRFAQVTNPPIDPLRENLVMSLAMFLGKRGNLLEPKAE----   96
                            P AVLS K R L   F Q F QVTNPPID LRE  VMSL   LG  GN L         

1ea0a.pdb             119  LQLESPVLTTAEFRAMRDYMGD-TAAEIDATFPVDG-GPEALRDALRRIRQETEDAVRGG  176
1llwa.pdb              97  -KLRSPLVNEVELQAIKTGQ--LQVAEVSTLYDLDGVN--SLEDALTNLVKTAIATVQAG  151
                             L SP     E  A          AE       DG     L DAL          V  G

1ea0a.pdb             177  ATHVILTDEA---MGPA-RAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFA  232
1llwa.pdb             152  AEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFA  211
                           A    LTD             IP  LA GAVH HLIR  LR   SL V TA    TH FA

1ea0a.pdb             233  VLIGVGATTVNAYLAQEAIAERHRRGLFG---------SMPLEKGMANYKKAIDDGLLKI  283
1llwa.pdb             212  CLVGYGASAICPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKI  271
                            L G GA     YLA E                        L     NY      GL KI

1ea0a.pdb             284  MSKMGISVISSYRGGGNFEAIGLSRALVAEHFPAMVSRISGIGLNGIQKKVLEQHATAYN  343
1llwa.pdb             272  LSKMGISLLASYHGAQIFEAIGLGAELVEYAFAGTTSRVGGLTIADVAGEVMVFHGMAFP  331
                            SKMGIS   SY G   FEAIGL   LV   F    SR  G         V   H  A  

1ea0a.pdb             344  EEVVALPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSEQVNKRPPMQLRD  403
1llwa.pdb             332  EMAKKLENFGFVNYRPGGEYHMNSPEMSKSLHKAVAAYY-DHYELYRQYLKDRPVTALRD  390
                           E    L   GF   R  G  H         L  AV          Y      RP   LRD

1ea0a.pdb             404  LLELRSTKAPVPVDEVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEG  463
1llwa.pdb             391  LLDFNADQPAISLEEVESVESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEG  450
                           LL            EVES   I KRF T GMS GALS EAH TL  AMNR GAKS SGEG

1ea0a.pdb             464  GEDPARFRPDK------------------NGDNWNSAIKQVASGRFGVTAEYLNQCRELE  505
1llwa.pdb             451  GEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLE  510
                           GED  R                       NGD  NSAIKQ ASGRFGVT EYL     LE

1ea0a.pdb             506  IKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQ  565
1llwa.pdb             511  IKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQ  570
                           IK AQGAKPGEGGQLPG KV E IA LR S PGV LISPPPHHDIYSIEDLAQLIYDL Q

1ea0a.pdb             566  INPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGL  625
1llwa.pdb             571  INPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGV  630
                           INP A V VKLV   GIGTIAAGVAKANADII ISG  GGTGASP  SIK AG PWE G 

1ea0a.pdb             626  SEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCH  685
1llwa.pdb             631  TEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCH  690
                            EVH VL  N LR RV LR DGGLKTG D V AA  GAEE G G    IA GCIM R CH

1ea0a.pdb             686  SNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTDLLH  745
1llwa.pdb             691  TNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLK  750
                            N CPVGV  Q   LRQ F G P  VVN F F AEEVR  LA LG RSL   IGRTDLL 

1ea0a.pdb             746  QV----------DLDLNPRLAQVDPG------------  761
1llwa.pdb             751  V-RSDVQLSKTQNLTLDCLLNLPD--TKQNRQWLNHEP  785
                                        L L   L   D              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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