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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:17:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glucosamine_iso.html
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#====================================
# Aligned_structures: 2
#   1: 1d9ta.pdb
#   2: 1deaa.pdb
#
# Length:        281
# Identity:      154/281 ( 54.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    154/281 ( 54.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           15/281 (  5.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d9ta.pdb               1  MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD   60
1deaa.pdb               1  MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ   60
                           M LI L    Q   WAA  I NRI  F P     F LGLPTG TP   YK L E  K G 

1d9ta.pdb              61  LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA  120
1deaa.pdb              61  VSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ  120
                            SFK V TFNMDEYVGLP  HPESY SFM  NFF H DI  EN   L GNA D  AEC  

1d9ta.pdb             121  FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK  180
1deaa.pdb             121  YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ  180
                            EEKI   G I LF GG G DGHIAFNEP SSL SRTR KTL  DT  AN RFFD     

1d9ta.pdb             181  VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD  240
1deaa.pdb             181  VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD  240
                           VP  ALTVGVGT  DA EVMIL  G  KA AL  A E  VNHMWT S  Q HP    VCD

1d9ta.pdb             241  EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQ  281
1deaa.pdb             241  EPSTMELKVKTLRYFNELEA---ENI-KG-L----------  266
                           E  T ELKVKT  YF  L                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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