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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:23:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Gly_radical.html
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#====================================
# Aligned_structures: 2
#   1: 1b8ba.pdb
#   2: 3pfla.pdb
#
# Length:        915
# Identity:       35/915 (  3.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     35/915 (  3.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          538/915 ( 58.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b8ba.pdb               1  S---------------------------------------------R-VFPTQRDLMAGI   14
3pfla.pdb               1  -SELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVME   59
                                                                              T        

1b8ba.pdb              15  VSKHIAKNMVP-------------------------------------------------   25
3pfla.pdb              60  GVKLENRTH--APVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKM  117
                             K                                                         

1b8ba.pdb              26  -----------------------------------SFIMKAHESG-IIHVHDIDYSPALP   49
3pfla.pdb             118  IEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLT-GL---PDAYG  173
                                                                                    A  

1b8ba.pdb              50  FTNCCLVDLKGMLENGFKLG----------------------------------------   69
3pfla.pdb             174  RGRIIGDYRRVAL-------YGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQ  226
                                       L                                               

1b8ba.pdb              70  ----------------------------------------------NAQIETPK------   77
3pfla.pdb             227  HRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRT-STFLDV  285
                                                                                       

1b8ba.pdb              78  --------------SIGVATAIMAQITAQV-------ASHQY---GGTTFANVDKVLSPY  113
3pfla.pdb             286  YIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATES--------  337
                                                        V                              

1b8ba.pdb             114  VKRTYAKHIEDAEKWQIADALNYAQSKTEKDVYDAFQAYEYEVNTLFSSNGQTPFVTLTF  173
3pfla.pdb                  ------------------------------------------------------------     
                                                                                       

1b8ba.pdb             174  GTGTDWTERMIQKAILKNRIKGLGRD-------------------GITPIFPKLVMFVEE  214
3pfla.pdb             338  IGGMGL--------------------DGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSE  377
                             G                                                P       E

1b8ba.pdb             215  GVNLYKDDPNYDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDS  274
3pfla.pdb             378  KL-------PLNFKKFAAKVSIDTSSLQYENDDLMRPDFNN-DDYAIACCVSPMI-----  424
                                        K  A                                C S        

1b8ba.pdb             275  TGNEILD--GRNNLGVVTLNLPRIALDSYI-------------------GTQF----NEQ  309
3pfla.pdb             425  -------VGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVME  477
                                              NL    L                       G          

1b8ba.pdb             310  KFVELFNERMDLCFEALMCRISSLKGVKAT--VAPILYQEGAFGVRLKPDDDIIELFKNG  367
3pfla.pdb             478  RMDHFMDWLAKQYITALNIIHYMHDK----YSYEASLMA-L-----HDRDV---------  518
                                          AL                   L            D          

1b8ba.pdb             368  RSSVSLGYIGIHELNILVGR-------------------------------------DIG  390
3pfla.pdb             519  IRTMACGIAGLSVAADSLS-AIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLA  577
                                 G  G                                               D  

1b8ba.pdb             391  REILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKLDTEKYGSVKDVTD---K-GWY  446
3pfla.pdb             578  VDLVERFMKKIQKLHTYRDAIPTQSVL-TITSNVVYGKKTG----NTPD---GRRAGAPF  629
                                                                K          D           

1b8ba.pdb             447  TNSFHVS-VE-ENITPFEKISREAPYH-FIATGGHISYVELPDMKN---------NLKGL  494
3pfla.pdb             630  GPGANPMHG-RDQKGAVASLTSVAKLPFAYAKDGISYTFSIVP---NALGKDDEVRKTNL  685
                                                  A      A  G                         L

1b8ba.pdb             495  EAVWDYAAQ------HLDYFGVNMP-VDK-------------NTIRRTCAYLGNPNERG-  533
3pfla.pdb             686  AGLMDGYFHHEASIEGGQHLNVNVMNRE-MLLDAMENPEKYPQLTIRVSGYAVRFNSLTK  744
                               D                VN                       R   Y    N    

1b8ba.pdb                  ---------------     
3pfla.pdb             745  EQQQDVITRTFTQSM  759
                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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