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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:24:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_2.html
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#====================================
# Aligned_structures: 3
#   1: 1bhga.pdb
#   2: 1dp0a1.pdb
#   3: 1dp0a2.pdb
#
# Length:        135
# Identity:        3/135 (  2.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     30/135 ( 22.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           54/135 ( 40.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bhga.pdb               1  TYIDDITVTTSVEQ-D-SGLVNYQISVKGS--NLFKLEVRLLDA-ENKVVANGTG-----   50
1dp0a1.pdb              1  TQISDFHVATRFNDDFSRAVLEAEVQMCGE--LRDYLRVTVSLWQGETQVASGTAPFGGE   58
1dp0a2.pdb              1  ----FFQFRLSG--------QTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVA   48
                               df v ts            ev   g     d l v    a   k vAsGt      

1bhga.pdb              51  ----------TQGQLKVPG--VSLWWPYLMHERPAYLYSLEVQLTA-QTS---L-GPVSD   93
1dp0a1.pdb             59  IIDERGGYA-DRVTLRLNVENPKLWSAE-----IPNLYRAVVELHT--A----DGTL-IE  105
1dp0a2.pdb             49  --------PQGKQLIELPE--LPQPES-----AGQLWLTVRVV-QPNATAWSEAGHI-SA   91
                                         l lp     lw           ly   V      t         s 

1bhga.pdb              94  FYTLPVGI----RT-  103
1dp0a1.pdb            106  AEACDVGF----R--  114
1dp0a2.pdb             92  WQQWRLAENLSV-TL  105
                                vg        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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