################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:18:31 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_20.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1hp5a.pdb
#   2: 1qba.pdb
#
# Length:        476
# Identity:      106/476 ( 22.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    106/476 ( 22.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          153/476 ( 32.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hp5a.pdb               1  YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG   60
1qba.pdb                1  FPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGG   60
                              R   LDV R F   D V R  D  A YK NK H HLSDD GWRI I   P L   GG

1hp5a.pdb              61  STEV----------------GG-GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNA  103
1qba.pdb               61  QR--CHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARA  118
                                               G    GG      Y  I  YA  R  EV PEIDMP H  A

1hp5a.pdb             104  ALASYA----------------ELNCD--GVAPPLYTGT---KVGFSSLCVDKDVTYDFV  142
1qba.pdb              119  AVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTT-SVQFFNRQ-SYLNPCLDSSQRFV  176
                           A  S                  E                       S L    D    FV

1hp5a.pdb             143  DDVIGELAALT-----PGRYLHIGGDEAHS------------------------------  167
1qba.pdb              177  DKVIGEIAQMHKEAGQPIKTWHFGGDEAKNIRLGAGYTDKAKPEPGKGIIDQGNEDKPWA  236
                           D VIGE A        P    H GGDEA                                

1hp5a.pdb             168  --------------TP-KADFVAFMKRVQPIVAKYGKTVVGW-HQLAG-AEPV-----EG  205
1qba.pdb              237  KSQVCQTMIKEGKVADMEHLPSYFGQEVSKLVKAHGIDRMQAWQDGLKDAESSKAFATSR  296
                                                  F   V   V   G             AE         

1hp5a.pdb             206  ALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDT--PLGLS-WAGYV  262
1qba.pdb              297  VGVNFWDTLYWG-G-FDSVNDWANKGYEVVVSNPDYVYMDFPYEVN-PDERGYYWGTRFS  353
                             V  W     G      V   A  G     S  D  Y D  Y        G        

1hp5a.pdb             263  EVQRSYDWDPAGY---------LPGAPA--------DAVRGVEAPLWTETLSDPDQLDYM  305
1qba.pdb              354  DERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYM  413
                                    P              G               G  A LW ET     Q  YM

1hp5a.pdb             306  AFPRLPGVAELGWSPASTHDWD----TYKVRLAAQAPYWEAAGIDFYRSPQVPWT-  356
1qba.pdb              414  IFPRALSVAERSWHRAGWEQD-YRAGR-----------------EYK--------G  443
                            FPR   VAE  W  A                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################