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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:38:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/HPPK.html
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#====================================
# Aligned_structures: 2
#   1: 1cbka.pdb
#   2: 1eqoa.pdb
#
# Length:        161
# Identity:       88/161 ( 54.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     88/161 ( 54.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            4/161 (  2.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cbka.pdb               1  MITAYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAK   60
1eqoa.pdb               1  -TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVA   59
                              AYIA GSNL  P EQ  AALKA       H  T SSFY   PLGPQDQPDY NA   

1cbka.pdb              61  IETELSPLKLLDELQRIENEQGRVRL-RRWGERTLDLDILLYGNEIIQNERLTIPHYDMH  119
1eqoa.pdb              60  LETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMK  119
                            ET L P  LL   QRIE  QGRVR   RWG RTLDLDI L GNE I  ERLT PHYDM 

1cbka.pdb             120  NREFVIVPLFEIASDLVLPNSQIITELVKQFADHKMIKLNP  160
1eqoa.pdb             120  NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW--  158
                           NR F   PLFEIA  LV P            A  K  K   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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