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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:30:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Heme_oxygenase.html
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#====================================
# Aligned_structures: 2
#   1: 1dvga.pdb
#   2: 1qq8a.pdb
#
# Length:        215
# Identity:      175/215 ( 81.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    175/215 ( 81.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            4/215 (  1.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dvga.pdb               1  SQDLSEALKEATKEVHIRAENSE--FRNFQKGQVSREGFKLVTASLYHIYTALEEEIERN   58
1qq8a.pdb               1  PQDLSEALKEATKEVHTQAENA-EFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERN   59
                            QDLSEALKEATKEVH  AEN     RNFQKGQV R GFKLV ASLYHIY ALEEEIERN

1dvga.pdb              59  KQNPVYAPLYFPEELHRRAALEQDLAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPEL  118
1qq8a.pdb              60  KESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPEL  119
                           K  PV AP YFPEELHR AALEQDLAFWYGP WQE IPYTPA Q YVKRLHEVG T PEL

1dvga.pdb             119  LVAHAYTRYLGDLSGGQVLKKIAQKALALPSSGEGLASFTFPSIDNPTKFKQLYRAR-NT  177
1qq8a.pdb             120  LVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNS  179
                           LVAHAYTRYLGDLSGGQVLKKIAQKAL LPSSGEGLA FTFP I   TKFKQLYR R N 

1dvga.pdb             178  LELTPEVKHRVTEEAKTAFLLNIELFEELQALLTE  212
1qq8a.pdb             180  LEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTH  214
                           LE TP V  RV EEAKTAFLLNI LFEELQ LLT 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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