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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:50:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/KAS.html
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#====================================
# Aligned_structures: 2
#   1: 1bq6a.pdb
#   2: 1d9ba.pdb
#
# Length:        407
# Identity:       66/407 ( 16.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     66/407 ( 16.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          110/407 ( 27.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bq6a.pdb               1  VSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTE--LKEKFQRM   58
1d9ba.pdb               1  -------------MYTKIIGTGSYLPEQVRTNADLEKM-V----------DTSDEWIV--   34
                                            I   G   P                            E     

1bq6a.pdb              59  CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ  118
1d9ba.pdb              35  -TRTGIRERHIA-APNE------------------------TVSTMGFEAATRAIEMAGI   68
                                I  R                                 V   G EAA  AI   G 

1bq6a.pdb             119  PKSKITHLIVCTTSGV--DMPGADYQLTKLLGLRPYVKRYMMYQQGFAGGTVLRLAKDLA  176
1d9ba.pdb              69  EKDQIGLIVVATTSA-THAFPSAACQIQSMLGIK-GCPAFDVAAACAGFTYALSVADQYV  126
                            K  I    V TTS      P A  Q    LG                    L  A    

1bq6a.pdb             177  ENNKG-ARVLVVCSEVTAVTFRGPSDTHLD--SLVGQALFGDGAAALIVGSDPVPEIEKP  233
1d9ba.pdb             127  KSG-AVKYALVVGSDVLARTCD--------PTDRGTIIIFGDGAGAAVLAAS-----EEP  172
                                    LVV S V A T                   FGDGA A           E P

1bq6a.pdb             234  IFEMVWTAQTIAPDSEGAIDGHLR-E------AGLTFHLLKDVPGIVSKNITKALVEAFE  286
1d9ba.pdb             173  --GIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAG-NEVFKVAVTELAHIVDETLA  229
                                 T                           LT      V             E   

1bq6a.pdb             287  PLGISDYN-SIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILD  345
1d9ba.pdb             230  ANNLD-RSQLDWLVPHQANLRIISATAKKLGMSMDNV-V-V-TLDRHGNTSAASVPCALD  285
                                          H     I      KL             L   GN S A V   LD

1bq6a.pdb             346  EMRKKSTQNGLKTTGEGL-----EWGVLFGFGPGLTIETVVLRSVAI  387
1d9ba.pdb             286  EAVRDG------------RIKPGQLVLLEAFGGGFTWGSALVRF---  317
                           E                          L  FG G T      R    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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