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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:51:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/KH.html
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#====================================
# Aligned_structures: 2
#   1: 1khma.pdb
#   2: 1vih.pdb
#
# Length:         92
# Identity:       16/ 92 ( 17.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     16/ 92 ( 17.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           24/ 92 ( 26.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1khma.pdb               1  GSPNSYGDLG-GPIITTQVTIPKDLARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDR   59
1vih.pdb                1  ----------INRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSN   48
                                               I     R  IGK G  I  I      S  I          

1khma.pdb              60  IITITGTQDQIQNAQYLLQNSVKQYSGKFF--   89
1vih.pdb               49  LIRIEGDPQGVQQAKRELLEL---------AS   71
                            I I G     Q A   L              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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