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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:55:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/L15.html
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#====================================
# Aligned_structures: 2
#   1: 1jj2k.pdb
#   2: 1jj2n.pdb
#
# Length:        166
# Identity:       24/166 ( 14.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/166 ( 14.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           72/166 ( 43.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jj2k.pdb               1  TSKKKRQ-RGSRTHGGG-SHKNR--RGAGHRGGRGDAGRDKHEFHNHEPLGKSGF-----   51
1jj2n.pdb               1  -------SKTNPRL---SSLIADLKSAARSSGG---AVWGD--------------VAERL   33
                                             S        A   GG   A                       

1jj2k.pdb              52  KRPQKVQEEAATIDVREIDENVTLLAADDVA-EFRVDVRDVVEEADDADYVKVLGAGQVR  110
1jj2n.pdb              34  EKPRR---THAEVNLGRIERY-------AQEDETVVVP------------GKVLGSGVLQ   71
                             P       A      I              E  V               KVLG G   

1jj2k.pdb             111  HELTLIADDFSEGAREKVEGAGGSVELTDLGEERQ-----------  145
1jj2n.pdb              72  KDVTVAAVDFSGTAETKIDQV-GEAVSLEQAIEN-NPEGSHVRVIR  115
                              T  A DFS  A  K     G         E             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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