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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:57:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Lipoprotein_6.html
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#====================================
# Aligned_structures: 2
#   1: 1f1ma.pdb
#   2: 1g5za.pdb
#
# Length:        166
# Identity:      105/166 ( 63.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    105/166 ( 63.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/166 (  3.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f1ma.pdb               1  PNLTEISKKITESNAVVLAVKEVETLLTSIDELAK-AIGKKIKSDVSLDNEADHNGSLMS   59
1g5za.pdb               1  PNLTEISKKITESNAVVLAVKEVETLLASIDELATKAIGKKIGNN-GLEANQSKNTSLLS   59
                           PNLTEISKKITESNAVVLAVKEVETLL SIDELA  AIGKKI     L      N SL S

1f1ma.pdb              60  GAYLISTLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKA  119
1g5za.pdb              60  GAYAISDLIAEKLNVL-KNEELKEKIDTAKQCSTEFTNKLKSEHAVLGLDNLTDDNAQRA  118
                           GAY IS LI  K        ELK  I  AK CS EFT KLK EH  LG    TDDNA  A

1f1ma.pdb             120  ILKTNNDKTKGADELEKLFESVKNLSKAAKEMLTNSVKELTSP---  162
1g5za.pdb             119  ILKKHANKDKGAAELEKLFKAVENLSKAAQDTLKNAVKELTSPIVA  164
                           ILK    K KGA ELEKLF  V NLSKAA   L N VKELTSP   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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