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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:49:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Lum_binding.html
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#====================================
# Aligned_structures: 4
#   1: 1i8da1.pdb
#   2: 1i8da2.pdb
#   3: 1kzla1.pdb
#   4: 1kzla2.pdb
#
# Length:        119
# Identity:        8/119 (  6.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     25/119 ( 21.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           31/119 ( 26.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1i8da1.pdb              1  MGGHFVQGHVDTVAEIVEKKQD-GEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV   59
1i8da2.pdb              1  IGGHLMSGHIMTTAEVAKILTS-ENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEV   59
1kzla1.pdb              1  ----MFTGLVEAIGVVKDVQGTIDNGFAMKIEA--PQILDDCHTGDSIAVNGTCLTVTDF   54
1kzla2.pdb              1  ----MFTGIVQGTAKLVSIDEK-PNFRTHVVEL-PDHMLDGLETGASVAHNGCCLTVTEI   54
                                  G v   a          n             l        ia  G  LTvt  

1i8da1.pdb             60  DDSTFSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEAHIADW---------  109
1i8da2.pdb             60  TPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAM-----  113
1kzla1.pdb             55  DRYHFTVGIAPESLRLTNLGQCKAGDPVNLERAVL-------------------SSTR-   93
1kzla2.pdb             55  NGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAK-------------------FS-DE   93
                               f      etl  t lg  k Gd VN E                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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