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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 07:42:38 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LuxS.html
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#====================================
# Aligned_structures: 4
#   1: 1inna.pdb
#   2: 1j6wa.pdb
#   3: 1j6xa.pdb
#   4: 1j98a.pdb
#
# Length:        166
# Identity:       30/166 ( 18.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     58/166 ( 34.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/166 ( 19.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1inna.pdb               1  -NVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLA   59
1j6wa.pdb               1  -LLDSFKVDHTK-NAPAVRIAKT-LTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFA   57
1j6xa.pdb               1  KNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDH-D-PSLHSLEHLVA   58
1j98a.pdb               1  --VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLA   58
                             veSF lDHtk  APyVR a       gd i k D RF qPN        iHtLEHL A

1inna.pdb              60  GYR-DHLE-----GVVDVSPGCRTG---YAVIGEPDEQGV-KAFEAALKDTAGHDQ---P  106
1j6wa.pdb              58  GFR-DHLN-GDSIEIIDISPGCRT-GF-YSLIGTPNEQKVSEAWLAS-QDVLGV-QDQAS  111
1j6xa.pdb              59  EIIRNHAN-----YVVDWSPGCQT-GFYLTVLNHDNYTEILEVLEKT-QDVLKA-K---E  107
1j98a.pdb              59  FTIRSHAEKYDHFDIIDISPMGQT-GYYLVVSGETTSAEIVDLLEDTMKEAVEI-T---E  113
                                H          D SPgc T      v g           e    d          

1inna.pdb             107  IPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILL------  146
1j6wa.pdb             112  IPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNED-LSLDN-  155
1j6xa.pdb             108  VPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWS-----EVG---  145
1j98a.pdb             114  IPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEEL-----LKVF-G  153
                           iP  ne qCG    H Le A   ar  l                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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