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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:06:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MCR_alpha.html
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#====================================
# Aligned_structures: 3
#   1: 1e6va.pdb
#   2: 1e6ya.pdb
#   3: 1mroa.pdb
#
# Length:        288
# Identity:      163/288 ( 56.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    254/288 ( 88.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/288 (  4.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e6va.pdb               1  RRARGENEPGGVPFGVLADCVQTMRKYPDDPAKVALEVIAAGAMLYDQIWLGSYMSGGVG   60
1e6ya.pdb               1  -RARGPNEPGGLSFGHLSDIVQTSRVS-EDPAKIALEVVGAGCMLYDQIWLGSYMSGGVG   58
1mroa.pdb               1  -RARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVG   59
                            RARGeNEPGGvpFG LaDivQtsRv  eDPakvaLeVvaaGaMLYDQIWLGSYMSGGVG

1e6va.pdb              61  FTQYATAVYPDNILDDYVYYGLEYVEDKYG-I-------AEAEPSMDVVKDVATEVTLYG  112
1e6ya.pdb              59  FTQYATAAYTDDILDNNTYYDVDYINDKYNGAATVGKDNK-VKASLEVVKDIATESTLYG  117
1mroa.pdb              60  FTQYATAAYTDNILDDFTYFGKEYVEDKYG-L-------CEAPNNMDTVLDVATEVTFYG  111
                           FTQYATAaYtDnILDd tYyg eYveDKYg           a  smdvVkDvATEvTlYG

1e6va.pdb             113  LEQYERYPAAMETHFGGSQRAAVCAAAAGCSTAFATGHAQAGLNGWYLSQILHKEGQGRL  172
1e6ya.pdb             118  IETYEKFPTALEDHFGGSQRATVLAAAAGVACSLATGNANAGLSGWYLSMYLHKEAWGRL  177
1mroa.pdb             112  LEQYEEYPALLEDQFGGS-RAAVVAAAAGCSTAFATGNAQTGLSGWYLSMYLHKEQHSRL  170
                           lEqYE yPaalEdhFGGS RAaV AAAAGcstafATGnAqaGLsGWYLSmyLHKE  gRL

1e6va.pdb             173  GFYGYALQDQCGAANSLSVRSDEGLPLELRGPNYPNYAMNVGHLGEYAGIVQAAHAARGD  232
1e6ya.pdb             178  GFF-FDLQD-QGATNVLSYQGDEGLPDELRGPNYPNYAMNVGHQGGYAGIAQAAHSGRGD  235
1mroa.pdb             171  GFY-YDLQD-QGASNVFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARGD  228
                           GFy ydLQD qGA NvlS rgDEGLPlELRGPNYPNYAMNVGHqGeYAGI QAaHaaRGD

1e6va.pdb             233  AFCVHPVIKVAFADENLVFDFTEPRKEFAKGALREFEPAGERDLIVPA  280
1e6ya.pdb             236  AFTVNPLLKVCFADDLLPFNFAEPRREFGRGAIREFVPAGERSLVIPA  283
1mroa.pdb             229  AFVFNPLVKIAFADDNLVFDFTNVRGEFAKGALREFEPAGERALITPA  276
                           AF vnPl KvaFADdnLvFdFtepR EFakGAlREFePAGER Li PA


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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