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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:19:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MCR_gamma.html
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#====================================
# Aligned_structures: 3
#   1: 1e6vc.pdb
#   2: 1e6yc.pdb
#   3: 1mroc.pdb
#
# Length:        252
# Identity:      113/252 ( 44.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    206/252 ( 81.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           11/252 (  4.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e6vc.pdb               1  ----FYYPGETDVAENRRKYMNPNYELKKLREIPDEDIVRLMGHREPGEEYPSVHPPLEE   56
1e6yc.pdb               1  AYERQYYPGATSVAANRRKHMSG-K-LEKLREISDEDLTAVLGHRAPGSDYPSTHPPLAE   58
1mroc.pdb               1  ---AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEE   57
                               qYYPG T VA NRRk mnp y LeKLREIsDED v  lGHRaPGeeYPSvHPPLeE

1e6vc.pdb              57  MEEPECPIRELVEPTEGAKAGDRIRYIQFTDSVYFAPIHPYIRARMYMWRYRGVDTGSLS  116
1e6yc.pdb              59  MGE-PASTRENVAATPGAAAGDRVRYIQFADSMYNAPATPYFRSYFAAINFRGVDPGTLS  117
1mroc.pdb              58  MDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLS  117
                           M E e  iRE Vept GAkAGDRvRYIQFtDSmYfAPa PY Rsr y  ryRGvD GtLS

1e6vc.pdb             117  GRQIIEVRERDLEKIAKELLETEIFDPARSGVRGATVHGHALRLDENGLMLHALRRYRLN  176
1e6yc.pdb             118  GRQIVEARERDMEQCAKVQMETEITDHALAGVRGATVHGHSVRLQEDGVMFDMLDRRRLE  177
1mroc.pdb             118  GRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYN  177
                           GRQIiE RERDlEkiaKellETEifDpArsGVRGatVHGHslRLdEdG MfdmLrR rln

1e6vc.pdb             177  EETGEVEYVKDQVGIELDEPIPVGAPADEDDLKERTTIYRIDGTPYREDEELLQVVQRIH  236
1e6yc.pdb             178  -N-GTIIMDKDQVAIPLDRKVDLGKPMSSEEAAKRTTIYRVDNVAFRDDAEVVEWVHRIF  235
1mroc.pdb             178  KDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIH  237
                              G vemvKdQvgieLDepvdlG P dee l erTTIYRvDg ayRdD E ve vqRIh

1e6vc.pdb             237  ELRTLAGYRPEE  248
1e6yc.pdb             236  DQRTKFGFQPK-  246
1mroc.pdb             238  VLRSQGGFNL--  247
                            lRt  Gf p  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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