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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:18:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MM_CoA_mutase_N.html
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#====================================
# Aligned_structures: 2
#   1: 1reqa.pdb
#   2: 1reqb.pdb
#
# Length:        590
# Identity:      108/590 ( 18.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    108/590 ( 18.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          165/590 ( 28.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1reqa.pdb               1  STLP-RFDSVDLGNAPVPADAARRFEELAAKAGTG------------------EAWETAE   41
1reqb.pdb               1  --TLSLAG---DF-PKA---TEEQWEREVEKVL--NRGRPPEKQLTFAECLKRLTVHTVD   49
                                                    E    K                          T  

1reqa.pdb              42  QIPVGTLFNEDVYKDMDWL--DTYAGIPPFVHGPYATMYAFR-----PWTIRQYAGFSTA   94
1reqb.pdb              50  GIDIVPMYRPKDAP-----KKLGYPGVAPFTRGTTVR-----NGDMDAWDVRALHEDPDE   99
                            I                     Y G  PF  G               W  R        

1reqa.pdb              95  KESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDNPRVAGDVGMAGVAID--SIYDMRELF  152
1reqb.pdb             100  KFTRKAILEGLERGVTSLLLRVD-PDA----------------------IAPE-HLDEVL  135
                           K         L  G   L    D P                                E  

1reqa.pdb             153  AGIPLDQMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYP  212
1reqb.pdb             136  SDVLLEMTKVEVFSRYDQGAAAEALVSVYERSDKPAKDLALNLGLDPIGFAAL---QGTE  192
                               L    V               V   E        LA     D              

1reqa.pdb             213  -PQPSMRIISEIFAYTSA-NMPKWNSISISGYHMQEAGATADIEMAYTLADGVDYIRAGE  270
1reqb.pdb             193  PDLT---VLGDWVR-RLAKFSPDSRAVTIDANIYHNAGAGDVAELAWALATGAEYVRALV  248
                                            A   P      I       AGA    E A  LA G  Y RA  

1reqa.pdb             271  SVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSMSLRTHSQT  330
1reqb.pdb             249  EQGFTATEAFDTINFRVTATHDQFLTIARLRALREAWARIGEVFGVD-EDKRGARQNAIT  307
                             G           F        F   A LRA R  WA     FG         R    T

1reqa.pdb             331  SGWSLTAQDVYNNVVRTCIEAMAATQGHTQSLHTNSLDEAIALPT-DFSARIARNTQLFL  389
1reqb.pdb             308  SWRELTREDPYVNILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVL  367
                           S   LT  D Y N  R  I    A  G   S  T     A  LP  DF  RIARNT   L

1reqa.pdb             390  QQESGTTRVIDPWSGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAA  449
1reqb.pdb             368  AEEVNIGRVNDPAGGSYYVESLTRSLADAAWKEFQEVEKLGGMSKAVMTEHVTKVLDACN  427
                             E    RV DP  GS YVE LT  LA  AW   QEVEK GGM KA              

1reqa.pdb             450  ARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERDPEKVKA  509
1reqb.pdb             428  AERAKRLANRKQPITAVSEFPMI-GARSIE------------------------------  456
                           A    R     QP   V                                           

1reqa.pdb             510  ALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYT  559
1reqb.pdb                  --------------------------------------------------     
                                                                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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