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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:31:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MYSc.html
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#====================================
# Aligned_structures: 2
#   1: 1b7ta.pdb
#   2: 1vom.pdb
#
# Length:        851
# Identity:      302/851 ( 35.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    302/851 ( 35.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          206/851 ( 24.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b7ta.pdb               1  -----FSDPDFQYLAVDAFDGK--------------KNCWVPDE-K-E-GFASAEIQSSK   38
1vom.pdb                1  NPIHDRTSDYHKYLKVK-----QGDSDLFKLTVSDKRYIWYNPDPDERDSYECGEIVSET   55
                                       YL V                       W              EI S  

1b7ta.pdb              39  GDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLI   98
1vom.pdb               56  SDSFTFKTV-DGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLI  114
                            D  T K V D   R VKKDD    NP KF   EDM    YLNE  V  NLR RY   LI

1b7ta.pdb              99  YTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSC  158
1vom.pdb              115  YTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSL  174
                           YTYSGLF  AVNP  R PIYT        G R  E  PH F   D AY  M  DR NQS 

1b7ta.pdb             159  LITGESGAGKTENTKKVIMYLAKVACAEG---SLEDQIIQANPVLEAYGNAKTTRNNNSS  215
1vom.pdb              175  LITGESGAGKTENTKKVIQYLASVAGR--NQGVLEQQILQANPILEAFGNAKTTRNNNSS  232
                           LITGESGAGKTENTKKVI YLA VA        LE QI QANP LEA GNAKTTRNNNSS

1b7ta.pdb             216  RFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVML  275
1vom.pdb              233  RFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALH  292
                           RFGKFI I F   G I GA I  YLLEKSRV  Q   ERNYHIFYQ    A  E      

1b7ta.pdb             276  VTPDSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGE  334
1vom.pdb              293  LA-GPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGN  351
                                      NQ  C       D  EFK    A DI GF  EE  S FK  A ILH G 

1b7ta.pdb             335  MKFK-----QAESDGTAEAEKVAFLCGINAGDLLKALLKPK-------VTKGQNMNQVVN  382
1vom.pdb              352  IKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSS  411
                            KF       A               G N   L KAL  P        V    N      

1b7ta.pdb             383  SVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTN  442
1vom.pdb              412  SRDALVKALYGRLFLWLVKKINNVLCS-ERAAYFIGVLDISGFEIFKVNS------FEQL  464
                           S  AL K LY R F WLV   N  L       Y IGVLDI GFEIF  NS          

1b7ta.pdb             443  ERLQQFFN-------HHMFILEQEEYKKEGIAWEFIDFGM-----DLQMCIDLIEKP--M  488
1vom.pdb              465  CINYTNEKLQQFFNHHMFKVEQEEYLKEK-INWTF-----IDFGLDSQATIDLIDGRQPP  518
                                          H       E  K   I W F          D Q  IDLI      

1b7ta.pdb             489  GILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGP--A-HFELHHYA  545
1vom.pdb              519  GILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPR---------FSKTEFGVTHYA  569
                           GIL  L E   FP A D     KL      KN     P               F   HYA

1b7ta.pdb             546  GNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFK-A------------QTISAVH  592
1vom.pdb              570  GQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQY  629
                           G V Y I  WLEKNKDP           S    V  LF                T  A  

1b7ta.pdb             593  RESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNG--------RKGFPS  644
1vom.pdb              630  KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPN  689
                            E L  LM  L  T PHFVRCIIPN    P       VL QL CNG        RKGFP 

1b7ta.pdb             645  RLIYSEFKQRYSILAPNAIPDGKTVSEKILAGL---------QMDPAEYRLGTTKVFFKA  695
1vom.pdb              690  RIIYADFVKRYYLLA------------------PVPRDQKATNIDPEQYRFGITKIFFR-  730
                           R IY  F  RY  LA                             DP  YR G TK FF  

1b7ta.pdb             696  GVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  755
1vom.pdb                   ------------------------------------------------------------     
                                                                                       

1b7ta.pdb             756  QWWKLYSKVKP  766
1vom.pdb                   -----------     
                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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