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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:25:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ModE_C.html
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#====================================
# Aligned_structures: 2
#   1: 1b9ma.pdb
#   2: 1h9ma.pdb
#
# Length:        150
# Identity:       45/150 ( 30.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/150 ( 30.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           24/150 ( 16.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b9ma.pdb               1  ----ARNQWFGTITARDHDDVQ-----QHVDVLLADGKTRLKVAITAQSGARLGLDEGKE   51
1h9ma.pdb               1  MKISARNVFKGTVSALK-----EGAVNAEVDILLGG-GDKLAAVVTLESARSLQLAAGKE   54
                               ARN   GT  A              VD LL      L    T  S   L L  GKE

1b9ma.pdb              52  VLILLKAPWVGITQDEAVA---QNADNQLPGIISHIERGAEQCEVL-ALPDGQTLCATVP  107
1h9ma.pdb              55  VVAVVKAPWVLLMTDSS--GYRLSARNILTGTVKTIETGAVNAEVTLALQGGTEITSMVT  112
                           V    KAPWV    D         A N L G    IE GA   EV  AL  G      V 

1b9ma.pdb             108  VNEAT--SLQQGQNVTAYFNADSVIIATLC  135
1h9ma.pdb             113  KEAVAELGLKPGASASAVIKASNVILGVP-  141
                                   L  G    A   A  VI     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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