################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 21:37:06 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/N6_N4_Mtase.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1boo.pdb # 2: 1eg2a.pdb # # Length: 331 # Identity: 50/331 ( 15.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 50/331 ( 15.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 110/331 ( 33.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1boo.pdb 1 NFGKKPAYTTS---NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQH-- 55 1eg2a.pdb 1 -----------GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYN-IMLA--------DW 40 D L L P S L PP 1boo.pdb 56 ----EYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-YMKGVPARSIYNFRVLIRMIDEVGF 110 1eg2a.pdb 41 DDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE-AGSG--DLISIISHMRQNSKM 97 Y W L P GS G M 1boo.pdb 111 FLAEDFYWFNPSKLPSPIEWVNKR--KIRVKDAVNTVWWFSKTEWPKSDITKVLA----- 163 1eg2a.pdb 98 LLANLIIWNYPNGM----------SAQRFFANRHEEIAWFAKTKKYFFDLDAVREPYDEE 147 LA W P WF KT D V 1boo.pdb 164 -------------------SIPPNLLQISNSESNGQYLANCKLMGIK----AHPARFPAK 200 1eg2a.pdb 148 TKAAYMKDKRLNPESVEKGRNPTNVWRMSRL---NGNS---------LERVGHPTQKPAA 195 P N S HP PA 1boo.pdb 201 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD---- 256 1eg2a.pdb 196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLRSY 255 E R L P V D F GS T VA E R I P 1boo.pdb 257 -----NNISEEKITDIYNRILNGESLDLNSI 282 1eg2a.pdb 256 EIVEGAAN--------FGAALQR-------- 270 L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################