################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:29:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NHase_beta.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1ireb.pdb
#   2: 2ahjb.pdb
#
# Length:        238
# Identity:       61/238 ( 25.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/238 ( 25.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/238 ( 15.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ireb.pdb               1  MNGVYDVGGTDGLGPINR--P-ADEPVFRAEWEKVAFAMFPATFR-AGFMGLDEFRFGIE   56
2ahjb.pdb               1  MDGVHDLAGVQGFGKVPHTVNADIGPTFHAEWEHLPYSLMFAGVAELGAFSVDEVRYVVE   60
                           M GV D  G  G G           P F AEWE        A     G    DE R   E

1ireb.pdb              57  QMNPAEYLESPYYWHWIRTYIHHGVRTGKIDLEELERRTQYYRENP--DAPLPEHEQKPE  114
2ahjb.pdb              61  RMEPRHYMMTPYYERYVIGVATLMVEKGILTQDELESLAG------GPFPLSRP------  108
                            M P  Y   PYY           V  G     ELE                        

1ireb.pdb             115  LIEFVNQAVYGGLPASREVDRPP-KFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH  173
2ahjb.pdb             109  --------SESEG--RPAPVET-TTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRT  157
                                                    F  G  VR       GH R   Y RG  GT     

1ireb.pdb             174  GAYIY-PDTAGNGLG-ECPEHLYTVRFTAQELWGPEGDPN-SSVYYDCWEPYIELVDT  228
2ahjb.pdb             158  TEKWPFPDAIGHGRNDAGEEPTYHVKFAAEELFGSDTD--GGSVVVDLFEGYLEPA--  211
                                 PD  G G      E  Y V F A EL G   D    SV  D  E Y E    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################