################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:32:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Nitroreductase.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1bkja.pdb
#   2: 1nox.pdb
#   3: 1vfra.pdb
#
# Length:        285
# Identity:       10/285 (  3.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     95/285 ( 33.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          117/285 ( 41.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bkja.pdb               1  -N---NTIETILAHRSIRKFT-AVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEK   55
1nox.pdb                1  --PVLDAKTAALKRRSIRRYR-KDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPAT   57
1vfra.pdb               1  TH---PIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAA   57
                                  i   l rrsirky    pv  e l  ileA l a Ss nlQpw ivvv d a 

1bkja.pdb              56  RNELAQFAG-N----QAYVESAAEFLVFCIDY--QR-HATINPD-----------VQA--   94
1nox.pdb               58  KRALREAAF-G----QAHVEEAPVVLVLYADL--ED-ALAH-LDEVIH-----PGVQGER  103
1vfra.pdb              58  KQRMHDSFANMHQFNQPHIKACSHVILFANKLSY-TR-D-D-YDVVLSKAVADKRITE--  111
                           k  l   a       Qahve a  vlvf  dl           D           vq   

1bkja.pdb              95  -----------------D--F---TELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLR  132
1nox.pdb              104  REAQK---QAIQRAFAAMG-Q---EARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGF-  155
1vfra.pdb             112  --EQKEAAFASFKFVELNCDENGE--HKAWTKPQAYLALGNALHTLARLNIDSTTMEGI-  166
                                                      kaw   qsyi lgn Ll le  glgsv m G  

1bkja.pdb             133  NSAAQVDELLG--LPENSAVLFGMCLGHPD-QN----PEVKPRLPAHVVVHENQYQELNL  185
1nox.pdb              156  -DPERVRAILG--LPSRAAIPALVALGYPA-EE----GYPSHRLPLERVVLWR-------  200
1vfra.pdb             167  -DPELLSEIFADE-LKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL-------  217
                            dpe v eilg   p   a     alGyp   e      pk Rlp e Vv          

1bkja.pdb             186  DDIQSYDQTMQAYYSTWSQEVTGKLAGESRPHILPYLNSKGLAKR  230
1nox.pdb                   ---------------------------------------------     
1vfra.pdb                  ---------------------------------------------     
                                                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################