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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:44:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Orn_Arg_deC_N.html
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#====================================
# Aligned_structures: 2
#   1: 1f3ta.pdb
#   2: 7odca.pdb
#
# Length:        230
# Identity:      157/230 ( 68.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    157/230 ( 68.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            1/230 (  0.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f3ta.pdb               1  DLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGV   60
7odca.pdb               1  DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGV   60
                           DLGDI  KH  W K LPRVTPFYAVKCND      TLAA GTGFDCAS TEIQ V G GV

1f3ta.pdb              61  PPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTVKFGAK  120
7odca.pdb              61  PAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIAT-KFGAT  119
                           P E  IYANPCKQ S I YA   GV  MTFD   EL KVA  HPKAK VLRI T KFGA 

1f3ta.pdb             121  VEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILD  180
7odca.pdb             120  LKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLD  179
                               R  LE AK LNIDV GVSFHVGSG TD  TF QA SD R VFDM TE GF MH LD

1f3ta.pdb             181  IGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASA  230
7odca.pdb             180  IGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASA  229
                           IGGGFPG  D  LKFEEI  VIN AL K FP D    I AEPGRYYVASA


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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