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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:44:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Orn_Arg_deC_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1f3ta.pdb
#   2: 7odca.pdb
#
# Length:        392
# Identity:      250/392 ( 63.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    250/392 ( 63.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/392 (  4.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f3ta.pdb               1  ----------RFLEG-FNTRDALCKKIS-GDPFFVADLGDIVRKHETWKKCLPRVTPFYA   48
7odca.pdb               1  SSFTKDEFDCHILDEGFTAKDILDQKINDKDAFYVADLGDILKKHLRWLKALPRVTPFYA   60
                                       L   F   D L  KI   D F VADLGDI  KH  W K LPRVTPFYA

1f3ta.pdb              49  VKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSG  108
7odca.pdb              61  VKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNG  120
                           VKCND      TLAA GTGFDCAS TEIQ V G GVP E  IYANPCKQ S I YA   G

1f3ta.pdb             109  VDVMTFDCVDELEKVAKTHPKAKMVLRISTVKFGAKVEDCRFILEQAKKLNIDVTGVSFH  168
7odca.pdb             121  VQMMTFDSEIELMKVARAHPKAKLVLRIAT-KFGATLKTSRLLLERAKELNIDVIGVSFH  179
                           V  MTFD   EL KVA  HPKAK VLRI T KFGA     R  LE AK LNIDV GVSFH

1f3ta.pdb             169  VGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINN  228
7odca.pdb             180  VGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINP  239
                           VGSG TD  TF QA SD R VFDM TE GF MH LDIGGGFPG  D  LKFEEI  VIN 

1f3ta.pdb             229  ALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVT--QSFMYYVNDGVYGSFNCIL  286
7odca.pdb             240  ALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWEQTFMYYVNDGVYGSFNCIL  299
                           AL K FP D    I AEPGRYYVASAFTLAVN IAKK    Q FMYYVNDGVYGSFNCIL

1f3ta.pdb             287  YDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYT  346
7odca.pdb             300  YDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYT  359
                           YDHA V  L Q  P P EK Y SS WGPTCDGLD IVER  LPEM VG W LFE MGAYT

1f3ta.pdb             347  VVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS  378
7odca.pdb             360  VAAASTFNGFQRPNIYYVMS--RPMWQLMK--  387
                           V   S FNGFQ P IYYV S            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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