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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:46:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PAF-AH.html
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#====================================
# Aligned_structures: 2
#   1: 1fxwf.pdb
#   2: 1wab.pdb
#
# Length:        212
# Identity:      140/212 ( 66.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    140/212 ( 66.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            0/212 (  0.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fxwf.pdb               1  SNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSP   60
1wab.pdb                1  ENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSP   60
                            NPA  P    D QGD RWMS H RFV D KDKEP V F GDS VQLM Q EIWRELFSP

1fxwf.pdb              61  LHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLI  120
1wab.pdb               61  LHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLV  120
                           LHALNFGIGGD T HVLWRL NGELE I PK  VVWVGTNNH  TAE V GGI AIVQL 

1fxwf.pdb             121  NTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDGA  180
1wab.pdb              121  NERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSDGT  180
                           N RQPQA   VLGLLPRG  PNPLR KN  VN L    L        LD D GFVHSDG 

1fxwf.pdb             181  ISCHDMFDFLHLTGGGYAKICKPLHELIMQLL  212
1wab.pdb              181  ISHHDMYDYLHLSRLGYTPVCRALHSLLLRLL  212
                           IS HDM D LHL   GY   C  LH L   LL


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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