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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:29:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PARP_reg.html
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#====================================
# Aligned_structures: 2
#   1: 1efya.pdb
#   2: 1gs0a.pdb
#
# Length:        135
# Identity:       45/135 ( 33.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/135 ( 33.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            7/135 (  5.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1efya.pdb               1  KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVS   60
1gs0a.pdb               1  ESQLDLRVQELLKLICNVQTMEEMMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIEDCIR   60
                            S L    Q L K I  V  M   M E   D    PLGKL   QI   Y  L        

1efya.pdb              61  DGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGG  120
1gs0a.pdb              61  AGQHGRALVEACNEFYTRIPHDFGLSIPPVIRTEKELSDKVKLLEALGDIEIALKLVK--  118
                            G          N FYT IPHDFG   PP          KV  L  L DIE A  L    

1efya.pdb             121  NEDGDKDPIDINYEK  135
1gs0a.pdb             119  -----EHPLDQHYRN  128
                                  P D  Y  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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