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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:39:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PA_phosphatase.html
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#====================================
# Aligned_structures: 3
#   1: 1qhwa.pdb
#   2: 1utea.pdb
#   3: 4kbpa.pdb
#
# Length:        371
# Identity:       41/371 ( 11.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    214/371 ( 57.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          129/371 ( 34.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1qhwa.pdb               1  ------STLRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTG   54
1utea.pdb               1  P----TPILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTG   56
4kbpa.pdb               1  -QTGLDVPYTFGLIGDL-G------QSFDSNTTLSHYELS--PKKGQTVLFVGDLSYA--   48
                                   lrFvavGDw G      htaremanak ia t    gadfilslGDnfYf  

1qhwa.pdb              55  VHDA-----N-DKRFQETFEDVFSDRAL-RNIPWYVLAGNHDHL---------GNVSAQI   98
1utea.pdb              57  VHDA-----K-DKRFQETFEDVFSDPSL-RNVPWHVLAGNHDHL---------GNVSAQI  100
4kbpa.pdb              49  ----DRYPNHDNVRWDT-WGRFTER--SVAYQPWIWTAGNHEIEFAPEINETEP-FKPFS  100
                                      dkRfqe fedvfsd  l rn PW vlAGNHdhl         g vsaqi

1qhwa.pdb              99  AYSKISKRWNFP--------SPYYRLRFKVPRSNITVAIFMLDTVMLCGNSDDFVSQQPE  150
1utea.pdb             101  AYSKISKRWNFP--------SPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPE  152
4kbpa.pdb             101  YRY------HVPYEASQSTSPFWYSIKRA------SAHIIVLSSYSA------------Y  136
                           ays      nfP        spyYrlrfk      svaIfmLdtv l            e

1qhwa.pdb             151  MPRDLGVARTQLSWLKKQLAAAK---EDYVLVAGHYPIWSIAEH-GP--TRCLVKNLRPL  204
1utea.pdb             153  RPRNLALARTQLAWIKKQLAAAK---EDYVLVAGHYPVWSIAEH-GP--THCLVKQLLPL  206
4kbpa.pdb             137  GRG-----TPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHF-MEGEAMRTKFEAW  190
                            pr     rtQl WlKKqLaaaK   edyvlVagHyP wsiaeH g   t clvk l pl

1qhwa.pdb             205  LAAYGVTAYLCGHDHNLQYLQ-D----------------E-NGVGYVLSGAG-N--FMDP  243
1utea.pdb             207  LTTHKVTAYLCGHDHNLQYLQ-D----------------E-NGLGFVLSGAG-N--FMDP  245
4kbpa.pdb             191  FVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDS  250
                           l  ykVtaylcGHdHnlqylq d                e ng gyvlsGag N  fmDp

1qhwa.pdb             244  SVRHQR--KVPNGYLRFHYGSEDSLGGFTYVEIGS-KEMSITYVEAS-G--KSLFKTSLP  297
1utea.pdb             246  SKKHLR--KVPNGYLRFHFGAENSLGGFAYVEITP-KEMSVTYIEAS-G--KSLFKTKLP  299
4kbpa.pdb             251  NM----IQPQ-PEYSAFREA----SFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFF  301
                           s       kv ngYlrFh g    lgGf yveI   kems ty eas G  kslfkt lp

1qhwa.pdb             298  RRP--------  300
1utea.pdb             300  RRA--------  302
4kbpa.pdb             302  NRHWYPVDDST  312
                           rR         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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