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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:52:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PBP.html
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#====================================
# Aligned_structures: 2
#   1: 1beha.pdb
#   2: 1qoua.pdb
#
# Length:        193
# Identity:       42/193 ( 21.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     42/193 ( 21.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           48/193 ( 24.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1beha.pdb               1  VDLSKWSGPL--SLQEVDEQPQH--PLHVTYA-GAAVDELGKVLTPTQVKNRPTSISWDG   55
1qoua.pdb               1  ----------GRVIGDVVDHFTSTVKMSVIYNSIKH-VYNGHELFPSAVTSTPRV-EVH-   47
                                           V           V Y         G  L P  V   P       

1beha.pdb              56  -LDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN-DISSGTVLSDYVGSGPPKGT  113
1qoua.pdb              48  GGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPN--I  105
                             D     TL  TDPD P   DP  RE  H  V    G  D S G     Y    P    

1beha.pdb             114  GLHRYVWLVYEQDRPLKCDEPILSNRSGD--HRGKFKVASFRKKYELRAPVAGTCYQAEW  171
1qoua.pdb             106  GIHRFVFLLFKQKKRG-------------VVCRDGFNTRKFTQENELGLPVAAVFFNCQR  152
                           G HR V L   Q                    R  F    F    EL  PVA        

1beha.pdb             172  DDYVPKLYEQLSG  184
1qoua.pdb             153  ET-----------  154
                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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