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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 15:25:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PDZ.html
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#====================================
# Aligned_structures: 6
#   1: 1be9a.pdb
#   2: 1i16.pdb
#   3: 1kwaa.pdb
#   4: 1pdr.pdb
#   5: 1qaua.pdb
#   6: 1qava.pdb
#
# Length:        115
# Identity:        5/115 (  4.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     13/115 ( 11.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/115 ( 27.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1be9a.pdb               1  -FLGEEDIPREPRRIVIHRGS-TGLGFNIIG-GE-D---GEGIFISFILAGGPADLS-GE   52
1i16.pdb                1  E--------ATVCTVTLEKMS-AGLGFSLEGGKG-SLHGDKPLTINRIFKGAA-SEQSET   49
1kwaa.pdb               1  ----------RSRLVQFQKNTDEPMGITLKM--N-E---LNHCIVARIMHGGMIHRQ-GT   43
1pdr.pdb                1  -------ITREPRKVVLHRGS-TGLGFNIVG-GE-D---GEGIFISFILAGGPADLS-GE   46
1qaua.pdb               1  ----------NVISVRLFKRKVGGLGFLVKE-RV-S---KPPVIISDLIRGGAAEQS-GL   44
1qava.pdb               1  -------GSLQRRRVTVRKADAGGLGISIKG-GREN---KMPILISKIFKGLAADQT-EA   48
                                         v        glG                  i  i  G         

1be9a.pdb              53  LRKGDQILSVNGVDLRNASHEQAAIALKNAG--QTVTIIAQYK-P--EEYSRFEA  102
1i16.pdb               50  VQPGDEILQLGGTAMQGLTRFEAWNIIKALP--DGPVTIVIRRKSLQ--------   94
1kwaa.pdb              44  LHVGDEIREINGISVANQTVEQLQKMLREMR--GSITFKIVPSYRE---------   87
1pdr.pdb               47  LRKGDRIISVNSVDLRAASHEQAAAALKNAG--QAVTIVAQYR-P--EEYSRQHA   96
1qaua.pdb              45  IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP-EG---------   89
1qava.pdb              49  LFVGDAILSVNGEDLSSATHDEAVQALKKTG--KEVVLEVKYM-K----------   90
                              GD I   n           a   l                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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