################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 03:43:19 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PEP-utilizers.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1h6za.pdb # 2: 1kbla.pdb # 3: 1zyma.pdb # # Length: 167 # Identity: 21/167 ( 12.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 65/167 ( 38.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 77/167 ( 46.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1h6za.pdb 1 MHPNLE-PGAEKANKPIGRGLAASPGAAVGQVVFD--------AESAKEWSGRGKKVIMV 51 1kbla.pdb 1 LHPTFNPAALK-AGEVIGSALPASPGAAAGKVYFT--------ADEAKAAHEKGERVILV 51 1zyma.pdb 1 ------------------SGILASPGIAFGKALLLKEKIIDLS--------AIQDEVILV 34 sgl ASPGaA Gkv f g VIlV 1h6za.pdb 52 RLETSPEDLA-G-MDAACGILTARGGMTSHAAVVARGMGKCCVSGCGD---MVIR--GKS 104 1kbla.pdb 52 RLETSPEDIE-G-MHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGE---IKINEEAKT 106 1zyma.pdb 35 AADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTS--------- 85 rletsPed a g m aa GilT rGGmTSHaavvARgmg ccvsGcG 1h6za.pdb 105 FKLNG-SVFREGDY-ITIDGSKGLIYA-------------------- 129 1kbla.pdb 107 FELGGHTFAEGDYISLDGSTGKIYK--GD------------------ 133 1zyma.pdb 86 ------QVKNDDYLILDAVNNQVYV--NPTNEVIDKMRAVQEQVASE 124 v dy ld k y #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################