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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:43:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PGAM.html
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#====================================
# Aligned_structures: 3
#   1: 1bif.pdb
#   2: 1fbta.pdb
#   3: 1qhfa.pdb
#
# Length:        263
# Identity:       41/263 ( 15.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    164/263 ( 62.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           79/263 ( 30.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bif.pdb                1  -SIYLCRHGESELNLKGRIG--GDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRT   57
1fbta.pdb               1  RSIYLCRHGESELNLRGRIG--GDSGLSARGKQYAYALANFIRSQGISSLKVWTSH-KRT   57
1qhfa.pdb               1  PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRA   60
                            siyLcRHGeSElNlkgrig  gD gLSarG q a  la fi  q i  lkv TS  kRt

1bif.pdb               58  IQTAEA-------LSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRY  110
1fbta.pdb              58  IQTAEA-------LGVPYEQWKALNEIDAGVCEE-TYEEIQEHYPEEFALRDQDKYRYRY  109
1qhfa.pdb              61  IQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPP  120
                           IQTAea       L vPyeq k LNEidaGvcee tyeEiq hypeEfalrdqdkyryry

1bif.pdb              111  PK-------------------------GESYEDLVQRLEPVIME----LERQ-ENVLVIC  140
1fbta.pdb             110  PK-------------------------GESYEDLVQRLEPVI-E----LERQ-ENVLVIC  138
1qhfa.pdb             121  PPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAA  180
                           Pk                         gESyedlvqRLePvi e    lerq enVlvic

1bif.pdb              141  HQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKLTPVAYGCK-VESIFLNVA--AVNTHRD  197
1fbta.pdb             139  HQAV-RCLLAYFLDKSSDELPYLKCPLHTVLKLTPVAYGCR-VESIYLNV----------  186
1qhfa.pdb             181  HGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLD-PEA-AAAGAA  238
                           Hqav RcLlayfldks  elpyLkcPlhtvLkltpvaygc  veSiyLn           

1bif.pdb              198  R-PQNVDISRPSEEALVTVPAHQ  219
1fbta.pdb                  -----------------------     
1qhfa.pdb             239  AV---------------------  240
                                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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