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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:28:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PHBH.html
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#====================================
# Aligned_structures: 2
#   1: 1foha.pdb
#   2: 1pbe.pdb
#
# Length:        487
# Identity:       61/487 ( 12.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/487 ( 12.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          135/487 ( 27.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1foha.pdb               1  TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY-----NGQADG   55
1pbe.pdb                1  -----MKTQVAIIGAGPSGLLLGQLLHKAG-----IDNVILERQTP---DYVLGRIRAGV   47
                                    V I GAGP GL     L             I                 A  

1foha.pdb              56  LQCRTLESLKNLGLADKILSEANDMSTIALYNPDENGHIRRT-DRIPDTLPGISRYHQVV  114
1pbe.pdb               48  LEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG-------QRRRIDLKR-LSGGKTVTV   99
                           L       L   G                               RI             V

1foha.pdb             115  LHQGRIERHILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSDHES  174
1pbe.pdb              100  YGQTEVTRDLMEAREACG---ATTVYQAA--EVRLHD--LQG-----ERPYVTFE-R---  143
                             Q    R                                                    

1foha.pdb             175  TPLQFGHKTENSLFHSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRT  234
1pbe.pdb              144  -----------------------------------DGERLRLDCDYIAGCDGFHGISRQS  168
                                                               GE     C Y  GCDG H   R  

1foha.pdb             235  L-GF---EMIGEQTDYIWGVLDAVPASNFPD-IRSRCAIHSAESGSIMIIPRENNLVRFY  289
1pbe.pdb              169  IPA-ERLKVFERVYPFGWLGLLAD--TPP--VSHELIYANH-PRGFALCSQRSATRSRYY  222
                                            W  L A                     G      R     R Y

1foha.pdb             290  VQLQ-------FTPEVVIANAKKIFHPY---TFDVQQLDWFTAYHIGQRVTEKFSKDERV  339
1pbe.pdb              223  VQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHG-RL  281
                           VQ            E      K                           V E      R 

1foha.pdb             340  FIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRA-KRDILKTYEEERHAFAQAL  398
1pbe.pdb              282  FLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE--GRGELLERYSAICLRRIWKA  339
                           F AGDA H   P    G N    D   L   L             L  Y           

1foha.pdb             399  IDFDHQFSRLFSGRPAKDVADEMGV------------SMDV---FKEAFVKGNEFASGTA  443
1pbe.pdb              340  ERFSWWMTSVLH-RFP---------DTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLP  389
                             F          R                                       E   G  

1foha.pdb             444  INYDE--  448
1pbe.pdb              390  -----YE  391
                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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