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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:32:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PKD.html
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#====================================
# Aligned_structures: 2
#   1: 1b4ra.pdb
#   2: 1ctn.pdb
#
# Length:        111
# Identity:       10/111 (  9.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     10/111 (  9.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/111 ( 29.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b4ra.pdb               1  ---ATLVGPHGPLAS---------------------GQLAAFHIAA-PL-PVTATRWDFG   34
1ctn.pdb                1  AAPGKPTIAWGNTK-FAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTG-TTAKILL   58
                                     G                                           T     

1b4ra.pdb              35  D-GS-AEVDAAGPAASH--RYVLPGRYHVTAVLALGAGSAL-LGTDVQVEA   80
1ctn.pdb               59  NGKEAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVAD  109
                                      G            GRY     L    G      T   V  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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