################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:54:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PTS_EIIA_2.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1a3aa.pdb
#   2: 1a6ja.pdb
#
# Length:        157
# Identity:       30/157 ( 19.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     30/157 ( 19.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/157 ( 12.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a3aa.pdb               1  LF-----KLGAENIFLGRKAATKEEAIRFAGEQLVKGGYV-EPEYVQAMLDREKLTPTYL   54
1a6ja.pdb               1  --LQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGI   58
                                   L  E          K  A     E   K           A L REK   T  

1a3aa.pdb              55  GESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFG-EEEDDIARLVIGIAARNNEH---IQ  110
1a6ja.pdb              59  GNGIAIPHGKL--EEDTLRAVGVFVQLETPIAFDAIDN-QPVDLLFALLVPADQTKTHLH  115
                           G  IA PHG        L    VF Q      F          L                

1a3aa.pdb             111  VITSLTNALDDESVIERLAHTTSVDEVLELLAGRK--  145
1a6ja.pdb             116  TLSLVAKRLADKTICRRLRAAQSDEELYQIITD--TE  150
                                   L D     RL    S  E           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################