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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:50:31 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Parvo_coat2.html
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#====================================
# Aligned_structures: 2
#   1: 1mvma.pdb
#   2: 4dpvz.pdb
#
# Length:        574
# Identity:      276/574 ( 48.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    276/574 ( 48.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/574 (  7.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mvma.pdb               1  ---------------GVGVSTGSYDNQTHYRFLGDGWVEITALATRLVHLNMPKSENYCR   45
4dpvz.pdb               1  GSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYRR   60
                                          GVG STG   NQT   FL  GWVEITA   RLVHLNMP SENY R

1mvma.pdb              46  IRVHNTTDTSVKGNMAKDDAHEQIWTPWSLVDANAWGVWLQPSDWQYICNTMSQLNLVSL  105
4dpvz.pdb              61  VVVNNMDKTAVNGNMALDDIHAQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSELHLVSF  120
                             V N   T V GNMA DD H QI TPWSLVDANAWGVW  P DWQ I NTMS L LVS 

1mvma.pdb             106  DQEIFNVVLKTVTEQDSGGQAIKIYNNDLTACMMVAVDSNNILPYTPAANSMETLGFYPW  165
4dpvz.pdb             121  EQEIFNVVLKTVSE-----PPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLGFYPW  175
                            QEIFNVVLKTV E        K YNNDLTA  MVA DSNN  P TPAA   ETLGFYPW

1mvma.pdb             166  KPTIASPYRYYFCVDRDLSVTYENQEGTIEHNVMGTPKGMNSQFFTIENTQQITLLRTGD  225
4dpvz.pdb             176  KPTIPTPWRYYFQWDRTLIPSHTGTSGTPTN-IYHGTDPDDVQFYTIENSVPVHLLRTGD  234
                           KPTI  P RYYF  DR L        GT              QF TIEN     LLRTGD

1mvma.pdb             226  EFATGTYYFDTNPVKLTHTWQTNRQLGQPPLLSTFPEADT--DAG-TLTAQGSRHGATQM  282
4dpvz.pdb             235  EFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQM  294
                           EFATGT  FD  P  LTHTWQTNR LG PP L   P        G     Q  R G TQM

1mvma.pdb             283  -EVNWVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKVPADVTQ-----GMDREANGSV  336
4dpvz.pdb             295  GNTNYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAAD---GNP  351
                              N   EA   RPA VG   P   FEAS  GPF  P                    G  

1mvma.pdb             337  RYSYGKQHGENWAAHGPAPERYTWDETNFGSGRDTRDGFIQSAPLVVPPPLNGILTNANP  396
4dpvz.pdb             352  RYAFGRQHGQKTTTTGETPERFTYIAHQD-TGRYPEGDWIQNINFNLPVTNDNVLLPTDP  410
                           RY  G QHG      G  PER T        GR      IQ      P      L    P

1mvma.pdb             397  IGTKNDIHFSNVFNSYGPLTTFSHPSPVYPQGQIWDKELDLEHKPRLHITAPFVCKNNAP  456
4dpvz.pdb             411  IGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCP  470
                           IG K  I   N FN YGPLT      PVYP GQIWDKE D   KPRLH  APFVC NN P

1mvma.pdb             457  GQMLVRLGPNLTDQYDPNGATLSRIV-TYGTFFWKGKLTMRAKLRANTTWNPVYQVSVED  515
4dpvz.pdb             471  GQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINV  530
                           GQ  V   PNLT  YDP          TY  F WKGKL   AKLRA  TWNP  Q S   

1mvma.pdb             516  NGNSYMSVTKWLPTATGNMQSVPLITRPVARNTY  549
4dpvz.pdb             531  D-----NQFNYVPSNIGGMKIVYEKSQLAPRKLY  559
                                       P   G M  V        R  Y


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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