################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:06:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Pep_deformylase.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1g2aa.pdb
#   2: 1jyma.pdb
#
# Length:        186
# Identity:       45/186 ( 24.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/186 ( 24.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/186 ( 17.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1g2aa.pdb               1  -SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETM---YAEEGIGLAATQVDIHQR   56
1jyma.pdb               1  DE-IKIVKYPDPILRRRSEVTNFDDN-LKRVVRK-----FDIYESKGIGLSAPQVNISKR   53
                                    PD  LR              R V          Y   GIGL A QV I  R

1g2aa.pdb              57  IIVIDVSE-----NRDERLVLINPELLEKSGETGIE-EGCLSIPEQRALVPRAEKVKIRA  110
1jyma.pdb              54  IIVWNAL-YEKRKEE-NERIFINPSIVEQSLVKLKLIEGC-LSFGIEGKVERPSIVSISY  110
                           IIV                  INP   E S       EGC         V R   V I  

1g2aa.pdb             111  LDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS--PLKQQRIRQKVEKLDRL----  164
1jyma.pdb             111  YDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKTQVDKKKVRPKLNELIRDYKATHSE  170
                            D  G        G      QHE DHL G LF D       K                  

1g2aa.pdb                  ------     
1jyma.pdb             171  EPLEHH  176
                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################