################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 22:07:48 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_C15.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1a2za.pdb # 2: 1auga.pdb # # Length: 221 # Identity: 75/221 ( 33.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 75/221 ( 33.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/221 ( 5.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1a2za.pdb 1 -MKKVLITGFEPFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEE 59 1auga.pdb 1 MEKKVLLTGFDPFGGETVNPSWEAVKRLNGAAEGPASIVSEQVPTVFYKSLAVLREAIKK 60 KKVL TGF PFGG NP K G A P L 1a2za.pdb 60 IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVR 119 1auga.pdb 61 HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIK 120 P I I G A IT ER A N ARIPDN G QP E I P AY LP 1a2za.pdb 120 AITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKF 179 1auga.pdb 121 RIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTLQK- 179 I GIPA SY AGT CN GFIH PY P Q K 1a2za.pdb 180 FLLGKNTPSMCLEAEIKAIELAVKVSLDYLEKDRDDIKIPL 220 1auga.pdb 180 -----SAPSLSLDHITKALKIAAVTAAVHE----DDIETG- 210 PS L KA A DDI #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################