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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:07:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_C15.html
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#====================================
# Aligned_structures: 2
#   1: 1a2za.pdb
#   2: 1auga.pdb
#
# Length:        221
# Identity:       75/221 ( 33.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     75/221 ( 33.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/221 (  5.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a2za.pdb               1  -MKKVLITGFEPFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEE   59
1auga.pdb               1  MEKKVLLTGFDPFGGETVNPSWEAVKRLNGAAEGPASIVSEQVPTVFYKSLAVLREAIKK   60
                             KKVL TGF PFGG   NP     K       G A       P         L      

1a2za.pdb              60  IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVR  119
1auga.pdb              61  HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIK  120
                             P I I  G A     IT ER A N   ARIPDN G QP  E I    P AY   LP  

1a2za.pdb             120  AITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKF  179
1auga.pdb             121  RIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTLQK-  179
                            I       GIPA  SY AGT  CN                   GFIH PY P Q   K 

1a2za.pdb             180  FLLGKNTPSMCLEAEIKAIELAVKVSLDYLEKDRDDIKIPL  220
1auga.pdb             180  -----SAPSLSLDHITKALKIAAVTAAVHE----DDIETG-  210
                                  PS  L    KA   A            DDI    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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