################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 22:08:08 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_C2.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1kful.pdb # 2: 1kxra.pdb # # Length: 364 # Identity: 196/364 ( 53.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 196/364 ( 53.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 54/364 ( 14.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1kful.pdb 1 AGIAAKLAKDREAAEGLGSHERAIKYLNQDYEALRNECLEAGTLFQDPSFPAIPSALGFK 60 1kxra.pdb 1 ---------------------NAIKYLGQDYENLRARCLQNGVLFQDDAFPPVSHSLGFK 39 AIKYL QDYE LR CL G LFQD FP LGFK 1kful.pdb 61 ELGPYSSKTRGMRWKRPTEICADPQFIIGGATRTDICQGALGDCWLLAAIASLTLNEEIL 120 1kxra.pdb 40 ELGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDSWLLAAIASLTLNETIL 99 ELGP SSKT G WKRPTE PQFI GATRTDICQGALGD WLLAAIASLTLNE IL 1kful.pdb 121 ARVVPLNQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALL 180 1kxra.pdb 100 HRVVPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALL 159 RVVP QSFQE YAGIFHFQ WQ GEWV VVVDD LPTKDG L FVHSA G EFWSALL 1kful.pdb 181 EKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELKKPPPNLFKIIQKALQKGSLLGCS 240 1kxra.pdb 160 EKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCS 219 EKAYAK NG YEALSGG T E FEDFTGG EWY L K P L II KAL GSLLGCS 1kful.pdb 241 IDITS--AADSEAITFQKLVKGHAYSVTGAEEVESNGSLQKLIRIRNPWGEV--EWTGRW 296 1kxra.pdb 220 INISDIRDLEAITF--KNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPW-- 275 I I LV GHAYSVT A V G LIR RNPWGEV 1kful.pdb 297 NDNC----PSWNTIDPEERERLT-RRHEDGEFWMSFS-DFLRHYSRLEICNLTPDTLTSD 350 1kxra.pdb 276 ----SDNSYE-WNKVDPYEREQLRVKMEDGEFWMSFRDFIREFTKLEICN---------- 320 EDGEFWMSF 1kful.pdb 351 TYKK 354 1kxra.pdb ---- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################