################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:08:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_C2.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1kful.pdb
#   2: 1kxra.pdb
#
# Length:        364
# Identity:      196/364 ( 53.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    196/364 ( 53.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           54/364 ( 14.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kful.pdb               1  AGIAAKLAKDREAAEGLGSHERAIKYLNQDYEALRNECLEAGTLFQDPSFPAIPSALGFK   60
1kxra.pdb               1  ---------------------NAIKYLGQDYENLRARCLQNGVLFQDDAFPPVSHSLGFK   39
                                                 AIKYL QDYE LR  CL  G LFQD  FP     LGFK

1kful.pdb              61  ELGPYSSKTRGMRWKRPTEICADPQFIIGGATRTDICQGALGDCWLLAAIASLTLNEEIL  120
1kxra.pdb              40  ELGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDSWLLAAIASLTLNETIL   99
                           ELGP SSKT G  WKRPTE    PQFI  GATRTDICQGALGD WLLAAIASLTLNE IL

1kful.pdb             121  ARVVPLNQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALL  180
1kxra.pdb             100  HRVVPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALL  159
                            RVVP  QSFQE YAGIFHFQ WQ GEWV VVVDD LPTKDG L FVHSA G EFWSALL

1kful.pdb             181  EKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELKKPPPNLFKIIQKALQKGSLLGCS  240
1kxra.pdb             160  EKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCS  219
                           EKAYAK NG YEALSGG T E FEDFTGG  EWY L K P  L  II KAL  GSLLGCS

1kful.pdb             241  IDITS--AADSEAITFQKLVKGHAYSVTGAEEVESNGSLQKLIRIRNPWGEV--EWTGRW  296
1kxra.pdb             220  INISDIRDLEAITF--KNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPW--  275
                           I I               LV GHAYSVT A  V   G    LIR RNPWGEV        

1kful.pdb             297  NDNC----PSWNTIDPEERERLT-RRHEDGEFWMSFS-DFLRHYSRLEICNLTPDTLTSD  350
1kxra.pdb             276  ----SDNSYE-WNKVDPYEREQLRVKMEDGEFWMSFRDFIREFTKLEICN----------  320
                                                      EDGEFWMSF                        

1kful.pdb             351  TYKK  354
1kxra.pdb                  ----     
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################