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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:08:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_C2_D1.html
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#====================================
# Aligned_structures: 2
#   1: 1kful.pdb
#   2: 1kxra.pdb
#
# Length:        209
# Identity:      144/209 ( 68.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    144/209 ( 68.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           21/209 ( 10.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kful.pdb               1  AGIAAKLAKDREAAEGLGSHERAIKYLNQDYEALRNECLEAGTLFQDPSFPAIPSALGFK   60
1kxra.pdb               1  ---------------------NAIKYLGQDYENLRARCLQNGVLFQDDAFPPVSHSLGFK   39
                                                 AIKYL QDYE LR  CL  G LFQD  FP     LGFK

1kful.pdb              61  ELGPYSSKTRGMRWKRPTEICADPQFIIGGATRTDICQGALGDCWLLAAIASLTLNEEIL  120
1kxra.pdb              40  ELGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDSWLLAAIASLTLNETIL   99
                           ELGP SSKT G  WKRPTE    PQFI  GATRTDICQGALGD WLLAAIASLTLNE IL

1kful.pdb             121  ARVVPLNQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALL  180
1kxra.pdb             100  HRVVPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALL  159
                            RVVP  QSFQE YAGIFHFQ WQ GEWV VVVDD LPTKDG L FVHSA G EFWSALL

1kful.pdb             181  EKAYAKINGCYEALSGGATTEGFEDFTGG  209
1kxra.pdb             160  EKAYAKVNGSYEALSGGCTSEAFEDFTGG  188
                           EKAYAK NG YEALSGG T E FEDFTGG


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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