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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:09:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_C2_D2.html
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#====================================
# Aligned_structures: 2
#   1: 1kful.pdb
#   2: 1kxra.pdb
#
# Length:        155
# Identity:       52/155 ( 33.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     52/155 ( 33.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/155 ( 21.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kful.pdb               1  IAEWYELKKPPPNLFKIIQKALQKGSLLGCSIDITS--AADSEAITFQKLVKGHAYSVTG   58
1kxra.pdb               1  VTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFK--NLVRGHAYSVTD   58
                             EWY L K P  L  II KAL  GSLLGCSI I               LV GHAYSVT 

1kful.pdb              59  AEEVESNGSLQKLIRIRNPWGEV--EWTGRWNDNC----PSWNTIDPEERERLT-RRHED  111
1kxra.pdb              59  AKQVTYQGQRVNLIRMRNPWGEVEWKGPW------SDNSYE-WNKVDPYEREQLRVKMED  111
                           A  V   G    LIR RNPWGEV                                   ED

1kful.pdb             112  GEFWMSFS-DFLRHYSRLEICNLTPDTLTSDTYKK  145
1kxra.pdb             112  GEFWMSFRDFIREFTKLEICN--------------  132
                           GEFWMSF                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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