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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:12:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_M17_N.html
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#====================================
# Aligned_structures: 2
#   1: 1gyta.pdb
#   2: 1lam.pdb
#
# Length:        203
# Identity:       24/203 ( 11.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/203 ( 11.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           68/203 ( 33.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gyta.pdb               1  MEFSVKSGSPEKQRS-ACIVVGVFEP------RRLSPIAEQLDKISDGYISALLRRG-EL   52
1lam.pdb                1  ---------------TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGP-   44
                                              V G                 E   K   G     L      

1gyta.pdb              53  EGKPGQTLLLHHVPNV-LSERILLIGCGKERE----------LDERQYKQVIQKTINTLN  101
1lam.pdb               45  PLKAGKTRTFYGLH--EDFPSVVVVGLGKKTAGIDEQENWHEGK-ENIRAAVAAGCRQIQ  101
                             K G T                  G GK                               

1gyta.pdb             102  DTGSMEAVCF-LTELHVKGRNNYW-KVRQAVETAKETLYSFDQLKTNKSEPRRPL--RKM  157
1lam.pdb              102  DLEIPSVEVDPC------------GDAQAAAEGAVLGLYEYDDLKQKRK------VVVSA  143
                           D                            A E A   LY  D LK               

1gyta.pdb             158  VFNVPTR-RELTSGERAIQHGLA  179
1lam.pdb              144  KLHG---SE----DQEAWQRGVL  159
                                           A Q G  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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