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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:12:35 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_M27.html
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#====================================
# Aligned_structures: 2
#   1: 1epwa.pdb
#   2: 3btaa.pdb
#
# Length:        562
# Identity:      159/562 ( 28.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    159/562 ( 28.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           66/562 ( 11.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1epwa.pdb               1  PVT---INNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTFGYKPED   57
3btaa.pdb               1  ---PFVNKQFNYKDPVNGVDIAYIKIP-NVGQMQPVKAFKIHNKIWVIPERDTF-TNPEE   55
                                    FNY DP     I     P   G     KAFKI   IW IPER TF   PE 

1epwa.pdb              58  F--NKSSGIFNRD-VCEYYDPDYLNTNDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIING  114
3btaa.pdb              56  GDLNPPPEAKQ--VPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRG  113
                              N             YYD  YL T   K   L    KLF RI S  LG  LL  I  G

1epwa.pdb             115  IPYLGDRR--VPLEEFNTNIASVTVNKLISNPGEVERKKGIFANLIIFGPGPVLNENETI  172
3btaa.pdb             114  IPFWG---GSTIDTELK-VIDTNCINVIQP-DG---SYRSEELNLVIIGPSADIIQFECK  165
                           IP  G         E    I     N      G          NL I GP       E  

1epwa.pdb             173  DIGIQNHFASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFN-----RRGYFSDPALIL  227
3btaa.pdb             166  SFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLE-----VDTNPLLGAGKFATDPAVTL  220
                             G       R G G      F P     F    E                   DPA  L

1epwa.pdb             228  MHELIHVLHGLYGIKV--DDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDK  285
3btaa.pdb             221  AHELIHAGHRLYGI-AINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQEN  279
                            HELIH  H LYGI           N       S      EEL TFGG D   I      

1epwa.pdb             286  SIYDKVLQNFRGIVDRLNKVLVCISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFD  345
3btaa.pdb             280  EFRLYYYNKFKDIASTLNKAKSIV-GTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFD  338
                                    F  I   LNK               KN FK KY   ED  GK S D   FD

1epwa.pdb             346  KLYKSLMFGFTETNIAENYKIKTRASYFSDSLPPVKIKNLLDNEIYTIEEGFNISDKDME  405
3btaa.pdb             339  KLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKI-NIVPKVNYTIYDGFNLRNTNLA  397
                           KLYK L    TE N     K   R  Y        KI N      YTI  GFN       

1epwa.pdb             406  KEYRGQNKAINKQAYEEISKEHLA----VYKIQMCKSV-GICIDVDNEDLFFIADKNSFS  460
3btaa.pdb             398  ANFNGQNTEINNMNFTKLKNF---TGLFEFYKLLCVR-NDLCIKVNNWDLFFSPSEDNFT  453
                               GQN  IN                       C      CI V N DLFF      F 

1epwa.pdb             461  DDLSKNERIEYN-TQSNYIENDF---PINELILD-TDLISKIELPSENTESLTDF----N  511
3btaa.pdb             454  NDLNKGEEITSDTNIEAAEEN-ISLDLIQQYYLTFNF---DN-EPENISIENLSSDIIGQ  508
                            DL K E I          EN      I    L           P               

1epwa.pdb             512  V-DVPVYEKQPAIKKIFTDE--  530
3btaa.pdb             509  LELMPNIERFPNGKKYEL--DK  528
                               P  E  P  KK       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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